Variant report

Variant	rs11952710
Chromosome Location	chr5:97899726-97899727
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10515279	1.00[AMR][1000 genomes]
rs11948171	1.00[AFR][1000 genomes]
rs11949725	1.00[AFR][1000 genomes]
rs11953103	1.00[AMR][1000 genomes]
rs11953696	0.81[AFR][1000 genomes]
rs11953718	1.00[AMR][1000 genomes]
rs11954005	1.00[AMR][1000 genomes]
rs11954858	1.00[AMR][1000 genomes]
rs11956218	1.00[AMR][1000 genomes]
rs11957136	1.00[AMR][1000 genomes]
rs11957743	1.00[AMR][1000 genomes]
rs11959969	1.00[AMR][1000 genomes]
rs17165503	1.00[AMR][1000 genomes]
rs17166107	0.90[AFR][1000 genomes]
rs17166117	1.00[AFR][1000 genomes]
rs17166168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17166173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17166179	1.00[AFR][1000 genomes]
rs17166219	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6873703	1.00[AMR][1000 genomes]
rs6874397	1.00[AMR][1000 genomes]
rs6886693	1.00[AMR][1000 genomes]
rs7731093	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882412	chr5:97796120-97953719	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1016611	chr5:97873846-98035559	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv537816	chr5:97873846-98035559	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	esv3401686	chr5:97881101-97900528	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1029509	chr5:97888644-98040172	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97893000-97905200	Weak transcription	NHLF	lung
2	chr5:97897400-97902800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:97898600-97899800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr5:97898800-97902000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr5:97899200-97900600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:97899400-97899800	Enhancers	Duodenum Mucosa	Duodenum
7	chr5:97899400-97900000	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr5:97899400-97900400	Enhancers	Stomach Mucosa	stomach
9	chr5:97899600-97899800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr5:97899600-97900000	Enhancers	Brain Substantia Nigra	brain
11	chr5:97899600-97900400	Enhancers	Fetal Intestine Small	intestine
12	chr5:97899600-97900800	Enhancers	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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