Variant report

Variant	rs11952745
Chromosome Location	chr5:97826575-97826576
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10038701	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10463479	0.80[ASN][1000 genomes]
rs11241621	0.84[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1156555	0.87[EUR][1000 genomes]
rs13154568	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1318105	0.81[AFR][1000 genomes]
rs13328102	0.98[ASN][1000 genomes]
rs1345571	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1363584	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1363585	0.87[EUR][1000 genomes]
rs1421632	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1422720	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1422722	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1422723	0.83[EUR][1000 genomes]
rs152954	0.80[EUR][1000 genomes]
rs152955	0.81[EUR][1000 genomes]
rs1559132	0.87[EUR][1000 genomes]
rs1560179	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1592734	0.85[EUR][1000 genomes]
rs181854	0.81[EUR][1000 genomes]
rs1820766	0.87[EUR][1000 genomes]
rs2042966	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2052447	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2431067	0.81[EUR][1000 genomes]
rs251481	0.81[EUR][1000 genomes]
rs251482	0.81[EUR][1000 genomes]
rs28629904	0.98[ASN][1000 genomes]
rs3860804	0.82[JPT][hapmap];0.87[EUR][1000 genomes]
rs457020	0.81[EUR][1000 genomes]
rs4601066	0.86[EUR][1000 genomes]
rs460723	0.81[EUR][1000 genomes]
rs463369	0.81[EUR][1000 genomes]
rs466058	0.81[EUR][1000 genomes]
rs466259	0.81[EUR][1000 genomes]
rs467853	0.80[EUR][1000 genomes]
rs469328	0.81[EUR][1000 genomes]
rs4703113	0.85[EUR][1000 genomes]
rs4703114	0.85[EUR][1000 genomes]
rs4703120	0.87[EUR][1000 genomes]
rs62367504	0.92[ASN][1000 genomes]
rs651434	0.81[EUR][1000 genomes]
rs6859748	0.80[ASN][1000 genomes]
rs6867574	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6870691	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6881724	0.86[EUR][1000 genomes]
rs6893541	0.87[EUR][1000 genomes]
rs723777	0.98[ASN][1000 genomes]
rs723778	0.98[ASN][1000 genomes]
rs765576	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs765577	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7712277	0.98[ASN][1000 genomes]
rs7719420	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7722295	0.98[ASN][1000 genomes]
rs7724726	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7726720	0.82[ASN][1000 genomes]
rs929739	0.85[EUR][1000 genomes]
rs9327251	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs985151	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882408	chr5:97616089-97836794	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830419	chr5:97653713-97829079	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv1018555	chr5:97719032-97873906	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv882412	chr5:97796120-97953719	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97818600-97827800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:97820400-97828000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:97825400-97832800	Weak transcription	NHDF-Ad	bronchial
4	chr5:97825600-97827000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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