Variant report

Variant	rs11952916
Chromosome Location	chr5:80861504-80861505
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:80859809..80862860-chr5:80870280..80872948,3	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11957295	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11957578	1.00[AMR][1000 genomes]
rs421449	1.00[YRI][hapmap]
rs6887220	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462221	chr5:80834138-80883110	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv598751	chr5:80834138-80883110	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv525225	chr5:80849084-80883110	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv882233	chr5:80849084-81049187	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv2763467	chr5:80852616-80872981	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv882234	chr5:80853708-80966666	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:80803600-80875200	Weak transcription	Fetal Brain Female	brain
2	chr5:80825200-80865200	Weak transcription	Fetal Brain Male	brain
3	chr5:80828800-80863400	Weak transcription	Fetal Lung	lung
4	chr5:80834400-80867000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr5:80834800-80866400	Weak transcription	Primary B cells from peripheral blood	blood
6	chr5:80834800-80870000	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr5:80835200-80863000	Weak transcription	Fetal Muscle Leg	muscle
8	chr5:80835200-80872800	Weak transcription	Fetal Kidney	kidney
9	chr5:80835200-80875200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr5:80835600-80876000	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr5:80840800-80883400	Weak transcription	HSMM	muscle
12	chr5:80840800-80884600	Weak transcription	Ovary	ovary
13	chr5:80844200-80884600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr5:80845800-80862000	Weak transcription	Thymus	Thymus
15	chr5:80845800-80863000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr5:80846200-80880600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr5:80849000-80885600	Weak transcription	Left Ventricle	heart
18	chr5:80850000-80862000	Weak transcription	Primary B cells from cord blood	blood
19	chr5:80850200-80862000	Weak transcription	Primary T cells from cord blood	blood
20	chr5:80850800-80864000	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr5:80850800-80866800	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr5:80854400-80862200	Weak transcription	Fetal Thymus	thymus
23	chr5:80859000-80863400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr5:80859600-80861600	Weak transcription	Dnd41	blood
25	chr5:80860200-80862200	Weak transcription	Primary hematopoietic stem cells	blood
26	chr5:80860200-80878800	Weak transcription	Esophagus	oesophagus
27	chr5:80860400-80866800	Weak transcription	Rectal Smooth Muscle	rectum
28	chr5:80860600-80862000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr5:80860600-80863000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr5:80860800-80862000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr5:80861000-80863000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr5:80861000-80863400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr5:80861200-80863000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr5:80861200-80863000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr5:80861400-80861800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr5:80861400-80863000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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