Variant report

Variant	rs11954051
Chromosome Location	chr5:37787428-37787429
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:37785209..37787852-chr5:37790346..37791903,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10055929	1.00[AMR][1000 genomes]
rs10058348	0.83[AMR][1000 genomes]
rs10064268	0.83[AMR][1000 genomes]
rs10067274	0.83[AMR][1000 genomes]
rs10069946	0.83[AMR][1000 genomes]
rs10071998	1.00[AMR][1000 genomes]
rs10072096	0.83[AMR][1000 genomes]
rs10072199	0.83[AMR][1000 genomes]
rs10074395	0.83[AMR][1000 genomes]
rs10075048	0.83[AMR][1000 genomes]
rs11957206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11957694	0.83[AMR][1000 genomes]
rs13358095	0.83[AMR][1000 genomes]
rs13359573	1.00[AMR][1000 genomes]
rs13436949	0.83[AMR][1000 genomes]
rs2972940	0.83[AMR][1000 genomes]
rs2973065	0.83[AMR][1000 genomes]
rs2973071	0.83[AMR][1000 genomes]
rs2973072	0.83[AMR][1000 genomes]
rs34034635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36010631	0.85[AMR][1000 genomes]
rs73748981	0.85[AMR][1000 genomes]
rs7709443	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7730584	0.83[AMR][1000 genomes]
rs7737381	0.83[AMR][1000 genomes]
rs983657	0.83[AMR][1000 genomes]
rs983658	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949716	chr5:37179341-37967352	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
2	nsv1023871	chr5:37330018-37804744	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv537729	chr5:37330018-37804744	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv597846	chr5:37430215-37813591	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:37785200-37788000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:37786000-37790600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:37786600-37787800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr5:37786600-37788200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:37786600-37788200	Enhancers	NHDF-Ad	bronchial
6	chr5:37786600-37788800	Enhancers	Osteobl	bone
7	chr5:37786800-37787600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr5:37786800-37787600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr5:37786800-37787600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr5:37786800-37787600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr5:37786800-37787800	Enhancers	Muscle Satellite Cultured Cells	--
12	chr5:37786800-37787800	Enhancers	NHEK	skin
13	chr5:37786800-37788000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr5:37786800-37788000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr5:37786800-37788200	Enhancers	HMEC	breast
16	chr5:37786800-37788400	Enhancers	HSMM	muscle
17	chr5:37787000-37787600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr5:37787000-37788000	Enhancers	NH-A	brain
19	chr5:37787200-37787800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr5:37787200-37788000	Enhancers	HSMMtube	muscle
21	chr5:37787200-37788400	Enhancers	Fetal Lung	lung
22	chr5:37787200-37793000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr5:37787400-37787600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr5:37787400-37787600	Enhancers	NHLF	lung
25	chr5:37787400-37788000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr5:37787400-37788000	Enhancers	Brain Hippocampus Middle	brain
27	chr5:37787400-37788400	Enhancers	Brain Substantia Nigra	brain

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