Variant report

Variant	rs11955053
Chromosome Location	chr5:16139201-16139202
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11960118	1.00[AMR][1000 genomes]
rs2218211	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34667413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3849089	0.83[AMR][1000 genomes]
rs3910974	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3910975	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3910976	1.00[AMR][1000 genomes]
rs3910977	1.00[AMR][1000 genomes]
rs3936412	0.83[AMR][1000 genomes]
rs4421104	0.96[AFR][1000 genomes]
rs4624790	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4702125	0.83[AMR][1000 genomes]
rs6858941	1.00[AMR][1000 genomes]
rs6861604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6878743	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6895469	1.00[AMR][1000 genomes]
rs7723127	1.00[AMR][1000 genomes]
rs7727113	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830217	chr5:16004704-16225229	Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16135600-16140000	Weak transcription	Fetal Heart	heart
2	chr5:16137200-16140400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:16139000-16143200	Weak transcription	Right Ventricle	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links