Variant report

Variant	rs11957743
Chromosome Location	chr5:97967780-97967781
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10515279	1.00[AMR][1000 genomes]
rs11952710	1.00[AMR][1000 genomes]
rs11953103	1.00[AMR][1000 genomes]
rs11953718	1.00[AMR][1000 genomes]
rs11954005	1.00[AMR][1000 genomes]
rs11954858	1.00[AMR][1000 genomes]
rs11956218	1.00[AMR][1000 genomes]
rs11957136	1.00[AMR][1000 genomes]
rs11959969	1.00[AMR][1000 genomes]
rs17165503	1.00[AMR][1000 genomes]
rs17166168	1.00[AMR][1000 genomes]
rs17166173	1.00[AMR][1000 genomes]
rs17166219	1.00[AMR][1000 genomes]
rs36072176	1.00[AMR][1000 genomes]
rs6873703	1.00[AMR][1000 genomes]
rs6874397	1.00[AMR][1000 genomes]
rs6886693	1.00[AMR][1000 genomes]
rs7731093	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016611	chr5:97873846-98035559	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv537816	chr5:97873846-98035559	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv1029509	chr5:97888644-98040172	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv882413	chr5:97918829-98022320	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1832089	chr5:97934125-97976039	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97965800-97968400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:97966200-97969200	Enhancers	NHDF-Ad	bronchial
3	chr5:97966400-97968200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:97966400-97968600	Enhancers	Osteobl	bone
5	chr5:97966800-97967800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr5:97966800-97967800	Enhancers	NHLF	lung
7	chr5:97966800-97968400	Enhancers	HSMM	muscle
8	chr5:97967000-97968000	Enhancers	NHEK	skin
9	chr5:97967000-97968200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr5:97967200-97967800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr5:97967200-97968000	Enhancers	HSMMtube	muscle
12	chr5:97967200-97968200	Enhancers	NH-A	brain
13	chr5:97967400-97968400	Enhancers	Muscle Satellite Cultured Cells	--
14	chr5:97967400-97975000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr5:97967600-97967800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr5:97967600-97968000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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