Variant report

Variant	rs11959433
Chromosome Location	chr5:151491242-151491243
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:151471420..151474359-chr5:151488636..151491340,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10053232	0.89[ASN][1000 genomes]
rs10075826	0.86[ASN][1000 genomes]
rs10515656	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12652437	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13353990	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1428163	0.87[ASN][1000 genomes]
rs154108	0.88[ASN][1000 genomes]
rs154694	0.80[ASN][1000 genomes]
rs160036	0.80[ASN][1000 genomes]
rs160037	0.80[ASN][1000 genomes]
rs166197	0.82[ASN][1000 genomes]
rs17112702	0.88[ASN][1000 genomes]
rs17742249	0.82[ASN][1000 genomes]
rs17742283	0.83[ASN][1000 genomes]
rs17742331	0.82[ASN][1000 genomes]
rs17742343	0.84[ASN][1000 genomes]
rs17742440	0.84[ASN][1000 genomes]
rs177439	0.82[ASN][1000 genomes]
rs17804556	0.84[ASN][1000 genomes]
rs185252	0.81[ASN][1000 genomes]
rs253723	0.88[ASN][1000 genomes]
rs253726	0.82[ASN][1000 genomes]
rs256142	0.94[AFR][1000 genomes]
rs28378200	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs29849	0.82[ASN][1000 genomes]
rs29851	0.87[ASN][1000 genomes]
rs29855	0.82[ASN][1000 genomes]
rs29856	0.88[ASN][1000 genomes]
rs3852201	0.84[ASN][1000 genomes]
rs3909851	0.84[ASN][1000 genomes]
rs3909854	0.84[ASN][1000 genomes]
rs39806	0.82[ASN][1000 genomes]
rs440768	0.88[ASN][1000 genomes]
rs4958513	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58240603	0.84[ASN][1000 genomes]
rs72802282	0.82[ASN][1000 genomes]
rs72802285	0.84[ASN][1000 genomes]
rs72802288	0.84[ASN][1000 genomes]
rs73274922	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020899	chr5:151412785-151516788	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2760935	chr5:151463117-151586051	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv883039	chr5:151471642-151540888	Enhancers Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv883040	chr5:151471642-151596273	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv5072	chr5:151490271-151530419	Enhancers Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151488400-151492600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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