Variant report

Variant	rs11960118
Chromosome Location	chr5:16119494-16119495
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11955053	1.00[AMR][1000 genomes]
rs2218211	1.00[AMR][1000 genomes]
rs34667413	1.00[AMR][1000 genomes]
rs3849089	0.83[AMR][1000 genomes]
rs3910974	1.00[AMR][1000 genomes]
rs3910975	1.00[AMR][1000 genomes]
rs3910976	1.00[AMR][1000 genomes]
rs3910977	1.00[AMR][1000 genomes]
rs3936412	0.83[AMR][1000 genomes]
rs4624790	1.00[AMR][1000 genomes]
rs4702125	0.84[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6858941	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6861604	1.00[AMR][1000 genomes]
rs6877136	0.81[AFR][1000 genomes]
rs6878743	1.00[AMR][1000 genomes]
rs6895469	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7723127	1.00[AMR][1000 genomes]
rs7727113	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830217	chr5:16004704-16225229	Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16113400-16122400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:16116400-16121000	Enhancers	Fetal Heart	heart
3	chr5:16119400-16120600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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