Variant report

Variant	rs11961087
Chromosome Location	chr6:151095945-151095946
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150735006..150737678-chr6:151094052..151096200,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11961263	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966279	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56685707	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs998307	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030326	chr6:150967665-151641372	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1019919	chr6:151028969-151161789	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv538474	chr6:151028969-151161789	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	esv3372927	chr6:151095559-151100857	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:151061600-151112200	Weak transcription	Right Atrium	heart
2	chr6:151086000-151097800	Weak transcription	Lung	lung
3	chr6:151086000-151098000	Weak transcription	Liver	Liver
4	chr6:151086000-151098000	Weak transcription	Spleen	Spleen
5	chr6:151086000-151121400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr6:151087600-151109200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:151088200-151096600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:151088200-151121400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr6:151089000-151096200	Weak transcription	HMEC	breast
10	chr6:151089000-151097000	Weak transcription	Ovary	ovary
11	chr6:151089000-151098000	Weak transcription	Esophagus	oesophagus
12	chr6:151089000-151105200	Weak transcription	Left Ventricle	heart
13	chr6:151089000-151109800	Weak transcription	Fetal Brain Male	brain
14	chr6:151089400-151096600	Weak transcription	NH-A	brain
15	chr6:151089800-151096600	Weak transcription	Brain Cingulate Gyrus	brain
16	chr6:151090200-151098000	Weak transcription	Fetal Kidney	kidney
17	chr6:151091000-151125800	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr6:151091400-151099000	Weak transcription	Placenta	Placenta
19	chr6:151092200-151097800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:151092800-151096600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr6:151093000-151100400	Strong transcription	Primary B cells from cord blood	blood
22	chr6:151093000-151109400	Weak transcription	Fetal Heart	heart
23	chr6:151094200-151105400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr6:151094800-151096200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr6:151094800-151096800	Weak transcription	Thymus	Thymus
26	chr6:151094800-151097800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:151094800-151098000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:151094800-151098800	Weak transcription	Fetal Stomach	stomach
29	chr6:151095400-151096600	Weak transcription	Fetal Lung	lung
30	chr6:151095600-151096000	ZNF genes & repeats	Fetal Thymus	thymus
31	chr6:151095600-151096200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr6:151095600-151096200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr6:151095600-151096600	Weak transcription	Brain Hippocampus Middle	brain
34	chr6:151095600-151097400	Weak transcription	Adipose Nuclei	Adipose
35	chr6:151095600-151098000	Weak transcription	Primary B cells from peripheral blood	blood
36	chr6:151095800-151096200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:151095800-151096800	Enhancers	Cortex derived primary cultured neurospheres	brain

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