Variant report

Variant	rs11963672
Chromosome Location	chr6:133282977-133282978
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:133270930..133273660-chr6:133282033..133284078,2	MCF-7	breast:
2	chr6:133275578..133277766-chr6:133282732..133284399,2	K562	blood:
3	chr6:133151095..133151913-chr6:133282483..133283322,2	MCF-7	breast:
4	chr6:133151099..133152076-chr6:133282420..133283410,5	MCF-7	breast:
5	chr6:133135326..133136899-chr6:133281433..133284001,2	K562	blood:
6	chr6:133151975..133153613-chr6:133282539..133284979,2	K562	blood:

Variant related genes	Relation type
ENSG00000112306	Chromatin interaction
ENSG00000206754	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17062032	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17062033	0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
3	nsv428154	chr6:133271975-133522803	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133280200-133283200	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr6:133280600-133283000	Enhancers	Fetal Lung	lung
3	chr6:133280600-133283200	Enhancers	HepG2	liver
4	chr6:133280600-133284400	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr6:133280800-133283000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr6:133280800-133286200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:133281200-133283000	Enhancers	Fetal Heart	heart
8	chr6:133281200-133285000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr6:133281600-133285400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:133281800-133283000	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr6:133281800-133283000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr6:133281800-133283000	Enhancers	Muscle Satellite Cultured Cells	--
13	chr6:133281800-133283200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:133282000-133283000	Enhancers	Fetal Muscle Leg	muscle
15	chr6:133282000-133283000	Enhancers	Left Ventricle	heart
16	chr6:133282000-133283000	Enhancers	Psoas Muscle	Psoas
17	chr6:133282000-133283200	Enhancers	H9 Cell Line	embryonic stem cell
18	chr6:133282200-133283000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr6:133282400-133283000	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr6:133282400-133283200	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr6:133282600-133285000	Weak transcription	HSMMtube	muscle
22	chr6:133282600-133285200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:133282600-133285400	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr6:133282800-133283800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr6:133282800-133285000	Weak transcription	A549	lung
26	chr6:133282800-133285200	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr6:133282800-133285200	Weak transcription	HSMM	muscle
28	chr6:133282800-133285200	Weak transcription	NH-A	brain
29	chr6:133282800-133285200	Weak transcription	Osteobl	bone
30	chr6:133282800-133285400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr6:133282800-133285600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr6:133282800-133289400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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