Variant report

Variant	rs11965555
Chromosome Location	chr6:151077227-151077228
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:151073651..151077490-chr6:151086273..151089717,3	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11968895	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17080238	0.81[EUR][1000 genomes]
rs1968998	0.83[EUR][1000 genomes]
rs3734408	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3734409	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3734410	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3734411	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3734413	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4869689	0.87[CEU][hapmap]
rs4869932	0.87[CEU][hapmap]
rs58164449	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72570336	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7454101	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9918380	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030326	chr6:150967665-151641372	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1019919	chr6:151028969-151161789	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv538474	chr6:151028969-151161789	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:151042600-151085400	Weak transcription	Esophagus	oesophagus
2	chr6:151056000-151087200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr6:151061600-151112200	Weak transcription	Right Atrium	heart
4	chr6:151072400-151079400	Strong transcription	Primary B cells from cord blood	blood
5	chr6:151072800-151085600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr6:151073600-151078000	Enhancers	Fetal Muscle Leg	muscle
7	chr6:151074600-151077600	Enhancers	Left Ventricle	heart
8	chr6:151074600-151078000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr6:151075000-151077400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr6:151075000-151077400	Enhancers	Lung	lung
11	chr6:151075000-151078000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:151075000-151078000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:151075200-151077800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:151075200-151085000	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr6:151075200-151093600	Weak transcription	Duodenum Mucosa	Duodenum
16	chr6:151075400-151078800	Enhancers	Fetal Heart	heart
17	chr6:151075400-151083800	Weak transcription	Brain Hippocampus Middle	brain
18	chr6:151075400-151084400	Weak transcription	Fetal Stomach	stomach
19	chr6:151075400-151085600	Weak transcription	Ovary	ovary
20	chr6:151075400-151086600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr6:151075600-151077400	Strong transcription	Thymus	Thymus
22	chr6:151075600-151082600	Weak transcription	Fetal Kidney	kidney
23	chr6:151075600-151085600	Weak transcription	Fetal Brain Female	brain
24	chr6:151075600-151094400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr6:151075800-151077600	Enhancers	Fetal Muscle Trunk	muscle
26	chr6:151075800-151084600	Weak transcription	Placenta	Placenta
27	chr6:151076200-151077600	Enhancers	Brain Substantia Nigra	brain
28	chr6:151076200-151079200	Strong transcription	Primary B cells from peripheral blood	blood
29	chr6:151076200-151085400	Weak transcription	Fetal Lung	lung
30	chr6:151076400-151083600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr6:151076600-151077600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr6:151076600-151077600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr6:151076600-151078000	Strong transcription	Fetal Thymus	thymus
34	chr6:151076600-151078000	Enhancers	NH-A	brain
35	chr6:151076800-151080000	Weak transcription	Spleen	Spleen
36	chr6:151076800-151082600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr6:151077000-151077800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr6:151077200-151077600	Enhancers	HMEC	breast
39	chr6:151077200-151078000	Enhancers	HUVEC	blood vessel

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