Variant report

Variant	rs11965684
Chromosome Location	chr6:150452407-150452408
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11965674	1.00[ASW][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11965744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11966337	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11967151	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17079341	0.85[AMR][1000 genomes]
rs17079342	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17079351	1.00[AMR][1000 genomes]
rs56046004	0.85[AMR][1000 genomes]
rs6940902	1.00[MEX][hapmap]
rs73603955	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73603958	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73605921	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7749549	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7759549	0.83[AMR][1000 genomes]
rs9322252	1.00[MEX][hapmap]
rs9479743	1.00[AMR][1000 genomes]
rs9479744	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886770	chr6:150395424-150499889	Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1026690	chr6:150419115-150485583	Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150440600-150452600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:150452400-150453000	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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