Variant report

Variant	rs11967781
Chromosome Location	chr6:54569462-54569463
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:54568574..54571267-chr6:54710555..54712360,2	MCF-7	breast:
2	chr6:54568299..54570747-chr6:54582453..54584898,3	MCF-7	breast:
3	chr6:54561293..54570100-chr6:54582505..54590247,14	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168143	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10447377	0.83[CEU][hapmap]
rs10948846	0.85[CHB][hapmap]
rs11757171	0.83[CEU][hapmap]
rs11967833	0.91[CEU][hapmap];0.85[CHB][hapmap];0.84[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12198936	0.91[CEU][hapmap];0.85[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12208090	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12525001	0.84[CHB][hapmap]
rs12527080	0.85[CHB][hapmap]
rs12527124	0.85[CHB][hapmap]
rs12527497	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12529276	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12662465	0.85[CHB][hapmap]
rs1395632	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1395635	0.91[CEU][hapmap];0.85[CHB][hapmap];0.84[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16869519	0.84[CHB][hapmap]
rs16885866	0.85[CHB][hapmap]
rs16885911	0.90[CHB][hapmap]
rs1948954	1.00[CHB][hapmap]
rs1983140	1.00[CHB][hapmap]
rs34970714	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4712068	0.85[CHB][hapmap]
rs4712070	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs4715469	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6903280	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6906715	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6908136	0.82[EUR][1000 genomes]
rs7740110	0.85[CHB][hapmap]
rs7746312	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7751908	0.85[CHB][hapmap]
rs925057	0.84[EUR][1000 genomes]
rs9296764	1.00[CEU][hapmap];0.85[CHB][hapmap];0.84[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9474965	0.84[EUR][1000 genomes]
rs9885668	0.84[EUR][1000 genomes]
rs995951	0.83[CEU][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54564200-54571000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr6:54564400-54570800	Weak transcription	Stomach Mucosa	stomach
3	chr6:54564400-54575200	Weak transcription	Fetal Lung	lung
4	chr6:54565400-54575400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr6:54568000-54570000	Weak transcription	Fetal Intestine Small	intestine

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