Variant report

Variant	rs11969964
Chromosome Location	chr6:150694707-150694708
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150674133..150675776-chr6:150694464..150696455,2	K562	blood:
2	chr6:150693974..150695744-chr6:150700976..150703493,2	K562	blood:

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs11962096	0.87[EUR][1000 genomes]
rs12208588	0.96[GIH][hapmap]
rs12530375	1.00[CEU][hapmap];0.80[JPT][hapmap];0.84[EUR][1000 genomes]
rs1339104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1339105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1339106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1339107	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1339109	0.90[ASN][1000 genomes]
rs1339110	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1416481	1.00[CEU][hapmap];0.92[GIH][hapmap];0.80[JPT][hapmap];0.93[MEX][hapmap]
rs1556881	1.00[CEU][hapmap];0.90[CHD][hapmap];0.96[GIH][hapmap];0.87[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2064213	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2076284	1.00[CEU][hapmap];0.92[GIH][hapmap];0.80[JPT][hapmap];0.86[MEX][hapmap];0.86[TSI][hapmap]
rs2076285	1.00[CEU][hapmap];0.92[GIH][hapmap];0.80[JPT][hapmap];0.85[MEX][hapmap];0.86[TSI][hapmap];0.87[EUR][1000 genomes]
rs2076286	1.00[CEU][hapmap];0.80[JPT][hapmap];0.87[EUR][1000 genomes]
rs2076287	1.00[CEU][hapmap];0.90[CHD][hapmap];0.96[GIH][hapmap];0.87[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2076288	1.00[CEU][hapmap];0.87[JPT][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2076289	1.00[CEU][hapmap];0.87[CHD][hapmap];0.96[GIH][hapmap];0.87[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2076290	1.00[CEU][hapmap];0.87[JPT][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2076291	1.00[CEU][hapmap];0.87[JPT][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2076292	1.00[CEU][hapmap];0.87[JPT][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3734734	1.00[CEU][hapmap];0.87[JPT][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3823259	1.00[CEU][hapmap];0.82[CHD][hapmap];0.96[GIH][hapmap];0.87[JPT][hapmap];0.86[MEX][hapmap];0.92[TSI][hapmap];0.90[EUR][1000 genomes]
rs3823260	0.90[EUR][1000 genomes]
rs4407723	1.00[CEU][hapmap];0.87[JPT][hapmap];0.93[EUR][1000 genomes]
rs4478415	0.86[MEX][hapmap]
rs5029121	1.00[CEU][hapmap];0.87[JPT][hapmap]
rs57538858	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs602842	0.93[JPT][hapmap]
rs60702386	0.85[EUR][1000 genomes]
rs612200	0.89[ASN][1000 genomes]
rs61253143	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs617594	0.94[ASN][1000 genomes]
rs618514	0.94[ASN][1000 genomes]
rs62432478	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62432481	0.92[ASN][1000 genomes]
rs62432482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62432483	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62432484	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62432506	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62432511	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62432540	0.87[EUR][1000 genomes]
rs62432541	0.87[EUR][1000 genomes]
rs62432542	0.87[EUR][1000 genomes]
rs629163	0.94[ASN][1000 genomes]
rs630632	0.94[ASN][1000 genomes]
rs632337	0.94[ASN][1000 genomes]
rs632829	0.94[ASN][1000 genomes]
rs652210	0.90[ASN][1000 genomes]
rs653588	0.94[ASN][1000 genomes]
rs654101	0.94[ASN][1000 genomes]
rs654476	0.94[ASN][1000 genomes]
rs660382	0.94[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.84[MKK][hapmap];0.94[ASN][1000 genomes]
rs671675	0.88[CHB][hapmap];0.85[CHD][hapmap];0.93[JPT][hapmap];0.81[MEX][hapmap];0.87[ASN][1000 genomes]
rs683255	0.94[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.81[MEX][hapmap];0.90[MKK][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6909655	0.87[EUR][1000 genomes]
rs6911086	0.96[GIH][hapmap]
rs6921360	0.87[EUR][1000 genomes]
rs73617698	0.90[EUR][1000 genomes]
rs7745569	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7749131	0.89[ASN][1000 genomes]
rs7749894	0.90[ASN][1000 genomes]
rs7757136	0.90[ASN][1000 genomes]
rs7757456	0.90[ASN][1000 genomes]
rs7761373	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761906	1.00[CEU][hapmap];0.95[CHD][hapmap];0.96[GIH][hapmap];0.87[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7762616	0.80[JPT][hapmap];0.84[EUR][1000 genomes]
rs7763368	0.96[GIH][hapmap]
rs7768510	0.96[GIH][hapmap]
rs7770389	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7772485	0.90[ASN][1000 genomes]
rs7774077	1.00[CEU][hapmap];0.82[CHD][hapmap];0.96[GIH][hapmap];0.80[JPT][hapmap];0.86[MEX][hapmap];0.86[TSI][hapmap];0.87[EUR][1000 genomes]
rs9322259	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9371429	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9371437	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9371991	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9372012	1.00[CEU][hapmap];0.92[GIH][hapmap];0.85[EUR][1000 genomes]
rs9383808	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9384388	0.85[MEX][hapmap]
rs9384445	1.00[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9384466	0.90[ASN][1000 genomes]
rs9384472	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9384473	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9384474	0.82[ASN][1000 genomes]
rs9384476	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9397292	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[CHD][hapmap];0.96[GIH][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9397302	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9397303	0.90[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9397937	0.90[ASN][1000 genomes]
rs9397944	1.00[CEU][hapmap];0.87[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9480323	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763602	chr6:150581193-150720666	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3370261	chr6:150692709-150694807	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150691000-150698200	Weak transcription	Stomach Mucosa	stomach
2	chr6:150691600-150700200	Weak transcription	Lung	lung
3	chr6:150691800-150695000	Enhancers	Liver	Liver
4	chr6:150692200-150698200	Weak transcription	Duodenum Mucosa	Duodenum
5	chr6:150692400-150695200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr6:150692800-150695000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:150692800-150695400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:150692800-150695600	Enhancers	Osteobl	bone
9	chr6:150693000-150695400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:150693000-150695400	Enhancers	NHDF-Ad	bronchial
11	chr6:150693200-150698400	Weak transcription	Fetal Intestine Large	intestine
12	chr6:150693400-150698000	Weak transcription	Fetal Intestine Small	intestine
13	chr6:150693400-150698400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr6:150694000-150694800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:150694000-150694800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:150694000-150694800	Enhancers	Brain Germinal Matrix	brain
17	chr6:150694000-150695000	Enhancers	Brain Cingulate Gyrus	brain
18	chr6:150694000-150695200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr6:150694000-150695600	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr6:150694000-150698200	Weak transcription	Brain Hippocampus Middle	brain
21	chr6:150694200-150694800	Enhancers	Fetal Lung	lung
22	chr6:150694400-150694800	Enhancers	Adipose Nuclei	Adipose
23	chr6:150694400-150694800	Enhancers	Brain Angular Gyrus	brain
24	chr6:150694400-150694800	Enhancers	Fetal Muscle Leg	muscle
25	chr6:150694600-150694800	Enhancers	Right Atrium	heart
26	chr6:150694600-150695000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:150694600-150695000	Enhancers	Right Ventricle	heart

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