Variant report

Variant	rs11970331
Chromosome Location	chr6:13073796-13073797
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13073241..13075964-chr6:13078893..13081612,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11962390	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4132579	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61067728	0.93[AMR][1000 genomes]
rs6931695	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs73368128	0.91[AFR][1000 genomes]
rs73368130	0.94[AFR][1000 genomes]
rs73368185	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73368186	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73368189	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs73368196	0.88[AMR][1000 genomes]
rs73368202	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73369806	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7774032	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv817350	chr6:12922859-13137655	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13054800-13074600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:13055200-13076400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr6:13059200-13077600	Weak transcription	Lung	lung
4	chr6:13067400-13075800	Weak transcription	Pancreas	Pancrea
5	chr6:13069800-13082200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:13070400-13077800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:13070800-13075400	Weak transcription	Left Ventricle	heart
8	chr6:13070800-13075600	Weak transcription	Right Ventricle	heart
9	chr6:13071800-13074000	Enhancers	Brain Hippocampus Middle	brain
10	chr6:13072200-13074600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr6:13072400-13074000	Enhancers	Aorta	Aorta
12	chr6:13072400-13074600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr6:13072600-13082200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:13073000-13075200	Weak transcription	Brain Anterior Caudate	brain
15	chr6:13073200-13074400	Weak transcription	Brain Angular Gyrus	brain
16	chr6:13073200-13074400	Weak transcription	Fetal Heart	heart
17	chr6:13073200-13076600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:13073400-13075400	Weak transcription	Brain Substantia Nigra	brain
19	chr6:13073400-13075600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:13073400-13075600	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr6:13073400-13075600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr6:13073400-13075800	Weak transcription	Brain Cingulate Gyrus	brain
23	chr6:13073400-13076600	Weak transcription	Fetal Lung	lung
24	chr6:13073400-13078400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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