Variant report

Variant	rs11972390
Chromosome Location	chr7:126516523-126516524
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11973715	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11978791	1.00[AMR][1000 genomes]
rs11983585	1.00[AMR][1000 genomes]
rs56813278	1.00[AMR][1000 genomes]
rs58042731	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6948817	1.00[AMR][1000 genomes]
rs73720785	1.00[AMR][1000 genomes]
rs73720798	1.00[AMR][1000 genomes]
rs73723512	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7796521	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv608376	chr7:126457779-126571077	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2758132	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv2759562	chr7:126494789-126677843	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv427805	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv971498	chr7:126497328-126519764	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv1849599	chr7:126507755-126557892	Enhancers Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv8211	chr7:126513183-126533173	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
11	esv1849801	chr7:126513882-126530828	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
12	esv10276	chr7:126514673-126533162	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
13	esv1846203	chr7:126514725-126531028	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
14	esv1832206	chr7:126514725-126533360	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
15	esv1812850	chr7:126514725-126536800	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
16	esv1800137	chr7:126514925-126530828	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
17	esv1815126	chr7:126514925-126530828	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
18	esv1826739	chr7:126514925-126530828	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126516200-126517000	Enhancers	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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