Variant report

Variant	rs11972487
Chromosome Location	chr7:145578752-145578753
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10224199	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10238054	0.88[EUR][1000 genomes]
rs10458274	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1112676	0.89[EUR][1000 genomes]
rs11975240	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12112237	0.91[ASN][1000 genomes]
rs12666281	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12668333	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12674186	1.00[ASN][1000 genomes]
rs1523733	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17169863	0.89[EUR][1000 genomes]
rs2030631	0.89[EUR][1000 genomes]
rs2030632	0.89[EUR][1000 genomes]
rs2372133	0.89[EUR][1000 genomes]
rs28459185	0.89[EUR][1000 genomes]
rs28687396	0.83[ASN][1000 genomes]
rs28860008	0.92[EUR][1000 genomes]
rs28875289	0.89[EUR][1000 genomes]
rs35095326	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4436045	0.94[EUR][1000 genomes]
rs4534070	0.91[ASN][1000 genomes]
rs55764478	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55788321	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55930903	0.89[EUR][1000 genomes]
rs56055653	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56067475	1.00[ASN][1000 genomes]
rs56295629	0.86[EUR][1000 genomes]
rs56747015	0.91[ASN][1000 genomes]
rs58456605	0.87[ASN][1000 genomes]
rs58546376	0.87[EUR][1000 genomes]
rs58869616	0.91[ASN][1000 genomes]
rs59450195	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59723212	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61044500	0.83[ASN][1000 genomes]
rs61593228	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6464704	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6946087	0.94[EUR][1000 genomes]
rs6948800	0.89[EUR][1000 genomes]
rs6954312	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6954634	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6969543	0.83[ASN][1000 genomes]
rs6974953	0.89[EUR][1000 genomes]
rs6978472	0.91[ASN][1000 genomes]
rs6978905	0.91[ASN][1000 genomes]
rs73458832	1.00[ASN][1000 genomes]
rs7781219	0.87[ASN][1000 genomes]
rs7785512	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7788691	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7792245	0.83[ASN][1000 genomes]
rs7795695	0.98[ASN][1000 genomes]
rs7805756	0.83[ASN][1000 genomes]
rs7805880	0.83[ASN][1000 genomes]
rs7808969	0.83[ASN][1000 genomes]
rs9655578	0.94[EUR][1000 genomes]
rs9655683	0.83[ASN][1000 genomes]
rs9918491	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754040	chr7:145303352-145698352	Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2755386	chr7:145303352-145698352	Genic enhancers Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1019118	chr7:145483353-145639795	Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv889384	chr7:145541783-146239545	Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:145566000-145583800	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links