Variant report

Variant	rs11977965
Chromosome Location	chr7:137703081-137703082
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10243728	0.96[EUR][1000 genomes]
rs10954597	0.82[AMR][1000 genomes]
rs10954599	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11980668	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13240736	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2113439	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2352137	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34080447	0.94[EUR][1000 genomes]
rs34970488	0.81[AMR][1000 genomes]
rs4732282	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4732283	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56083840	0.81[AMR][1000 genomes]
rs6944019	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6969540	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs713470	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs713471	0.81[AMR][1000 genomes]
rs730865	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518070	chr7:137534627-137808839	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137688000-137703800	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr7:137699800-137708800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:137700400-137703800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr7:137700600-137703800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:137700600-137708800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:137700800-137709600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr7:137703000-137703200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr7:137703000-137703400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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