Variant report

Variant	rs11978532
Chromosome Location	chr7:104854370-104854371
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:104851794..104856140-chr7:104862639..104865713,4	K562	blood:
2	chr7:104850289..104852047-chr7:104854189..104856772,3	MCF-7	breast:
3	chr7:104853847..104856619-chr7:104856817..104860250,3	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12705300	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs71562646	1.00[AFR][1000 genomes]
rs71562649	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34588	chr7:104737612-105153242	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv2757233	chr7:104758250-105208492	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	esv2759549	chr7:104758250-105208492	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv8196	chr7:104763559-105155978	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	esv34580	chr7:104763580-105153242	Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	esv2758127	chr7:104766707-105110581	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv1028228	chr7:104807207-105182998	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
8	nsv932138	chr7:104826194-105152816	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
9	nsv1015688	chr7:104849770-105182998	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
10	nsv967467	chr7:104850694-104859017	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104822000-104858800	Weak transcription	Gastric	stomach
2	chr7:104839400-104858400	Weak transcription	NHLF	lung
3	chr7:104839600-104857200	Weak transcription	A549	lung
4	chr7:104842200-104865400	Weak transcription	K562	blood
5	chr7:104842400-104857200	Weak transcription	HMEC	breast
6	chr7:104843200-104863400	Weak transcription	HepG2	liver
7	chr7:104843800-104859600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:104844000-104863200	Weak transcription	Fetal Intestine Large	intestine
9	chr7:104844200-104869000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr7:104844200-104869000	Weak transcription	Fetal Intestine Small	intestine
11	chr7:104844200-104869000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr7:104844600-104857800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr7:104845400-104857000	Weak transcription	NHEK	skin
14	chr7:104845400-104857200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr7:104845400-104858800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr7:104847200-104862600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr7:104848600-104854600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr7:104848600-104860200	Genic enhancers	Dnd41	blood
19	chr7:104850000-104858400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr7:104850000-104858400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr7:104850400-104857400	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr7:104851000-104858400	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr7:104851400-104854600	Enhancers	Brain Hippocampus Middle	brain
24	chr7:104851400-104857800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr7:104851400-104863400	Weak transcription	Ovary	ovary
26	chr7:104851600-104854600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr7:104851600-104854600	Weak transcription	Aorta	Aorta
28	chr7:104851600-104854800	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr7:104851600-104855800	Weak transcription	Small Intestine	intestine
30	chr7:104851600-104858400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr7:104851600-104858600	Weak transcription	Psoas Muscle	Psoas
32	chr7:104851600-104859800	Weak transcription	HSMM	muscle
33	chr7:104851600-104878600	Weak transcription	Right Ventricle	heart
34	chr7:104851800-104855800	Weak transcription	Fetal Heart	heart
35	chr7:104851800-104870400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr7:104852000-104857400	Weak transcription	Colon Smooth Muscle	Colon
37	chr7:104852000-104857400	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr7:104852000-104859400	Weak transcription	Esophagus	oesophagus
39	chr7:104852000-104862000	Weak transcription	Right Atrium	heart
40	chr7:104852000-104863400	Weak transcription	Left Ventricle	heart
41	chr7:104852000-104863400	Weak transcription	Pancreas	Pancrea
42	chr7:104852200-104855000	Weak transcription	Fetal Muscle Leg	muscle
43	chr7:104852200-104856600	Weak transcription	Brain Angular Gyrus	brain
44	chr7:104852200-104857200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr7:104852200-104859600	Weak transcription	Stomach Mucosa	stomach
46	chr7:104852200-104863400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr7:104852200-104863400	Weak transcription	Fetal Thymus	thymus
48	chr7:104852400-104854800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
49	chr7:104852600-104854800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr7:104852800-104856400	Enhancers	Primary T helper cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links