Variant report

Variant	rs11979073
Chromosome Location	chr7:47615258-47615259
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:47605863..47608124-chr7:47613881..47615975,2	MCF-7	breast:
2	chr7:47614988..47617340-chr7:47677983..47680284,2	MCF-7	breast:
3	chr7:47614646..47616884-chr7:47622647..47624441,2	K562	blood:
4	chr7:47511421..47516767-chr7:47612784..47619137,7	MCF-7	breast:
5	chr7:47604407..47606267-chr7:47614343..47617025,2	MCF-7	breast:
6	chr7:47615166..47617595-chr7:47642791..47644450,2	MCF-7	breast:
7	chr7:47614357..47617342-chr7:47728067..47729946,2	MCF-7	breast:
8	chr7:47550884..47552551-chr7:47614248..47615776,2	MCF-7	breast:

No data

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17172893	1.00[AMR][1000 genomes]
rs4632968	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026223	chr7:47560728-48243287	Genic enhancers Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:47608600-47616600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr7:47609000-47619800	Enhancers	Placenta	Placenta
3	chr7:47609600-47619200	Genic enhancers	Fetal Intestine Small	intestine
4	chr7:47609800-47619800	Enhancers	Stomach Mucosa	stomach
5	chr7:47610800-47620600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr7:47611400-47616600	Weak transcription	Brain Germinal Matrix	brain
7	chr7:47611600-47618600	Enhancers	Primary hematopoietic stem cells	blood
8	chr7:47611600-47620200	Enhancers	Primary B cells from peripheral blood	blood
9	chr7:47611800-47615600	Enhancers	Fetal Intestine Large	intestine
10	chr7:47611800-47615800	Weak transcription	Psoas Muscle	Psoas
11	chr7:47611800-47616000	Enhancers	Colon Smooth Muscle	Colon
12	chr7:47612000-47615400	Weak transcription	Right Ventricle	heart
13	chr7:47612000-47615800	Weak transcription	Brain Anterior Caudate	brain
14	chr7:47612000-47616000	Weak transcription	Brain Angular Gyrus	brain
15	chr7:47612000-47616200	Weak transcription	Brain Cingulate Gyrus	brain
16	chr7:47612000-47616400	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr7:47612000-47619400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr7:47612000-47620400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr7:47612200-47616200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr7:47612600-47617600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
21	chr7:47612800-47616600	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr7:47613200-47616000	Enhancers	Fetal Stomach	stomach
23	chr7:47613200-47619400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr7:47613400-47615400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr7:47613400-47615600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr7:47613400-47615600	Weak transcription	Gastric	stomach
27	chr7:47613400-47616000	Weak transcription	Brain Substantia Nigra	brain
28	chr7:47613400-47616000	Weak transcription	Left Ventricle	heart
29	chr7:47613400-47616200	Enhancers	Duodenum Mucosa	Duodenum
30	chr7:47613400-47616600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr7:47613400-47618600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr7:47613600-47615600	Weak transcription	Esophagus	oesophagus
33	chr7:47613600-47615800	Weak transcription	Right Atrium	heart
34	chr7:47613600-47619400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr7:47613800-47615600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr7:47613800-47615600	Weak transcription	Fetal Muscle Trunk	muscle
37	chr7:47613800-47615800	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr7:47613800-47615800	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr7:47613800-47615800	Enhancers	Stomach Smooth Muscle	stomach
40	chr7:47613800-47617200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr7:47613800-47618800	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr7:47613800-47619400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr7:47614000-47616200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr7:47614000-47617400	Genic enhancers	HSMM	muscle
45	chr7:47614000-47619800	Weak transcription	Fetal Brain Male	brain
46	chr7:47614200-47615600	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr7:47614200-47615600	Weak transcription	Fetal Heart	heart
48	chr7:47614200-47615800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr7:47614200-47615800	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr7:47614400-47615400	Weak transcription	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links