Variant report

Variant	rs11979993
Chromosome Location	chr7:103805516-103805517
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs1019312	0.91[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10234499	1.00[EUR][1000 genomes]
rs10235130	1.00[EUR][1000 genomes]
rs10235201	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10241191	0.91[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10242752	0.82[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10249033	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10250235	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10251308	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10251561	1.00[EUR][1000 genomes]
rs10251976	0.82[AFR][1000 genomes]
rs10255806	0.91[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10256764	1.00[EUR][1000 genomes]
rs10258773	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10260238	0.91[YRI][hapmap];0.85[AFR][1000 genomes]
rs10262560	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10262796	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10262996	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10263828	1.00[EUR][1000 genomes]
rs10266337	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10267412	0.91[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10267940	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10268209	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10270562	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10271923	0.91[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10275484	1.00[EUR][1000 genomes]
rs10276243	0.91[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10277637	0.81[YRI][hapmap]
rs10278320	0.91[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10279736	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10281709	0.91[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10282300	0.91[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10487184	0.91[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10487192	0.87[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11489610	0.83[YRI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11972422	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11979390	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11980018	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12112576	1.00[EUR][1000 genomes]
rs16873387	0.91[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17158586	1.00[EUR][1000 genomes]
rs17159290	0.86[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17159774	1.00[EUR][1000 genomes]
rs2307409	1.00[EUR][1000 genomes]
rs2385134	0.91[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28481813	1.00[EUR][1000 genomes]
rs28644319	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28645598	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28686914	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28702500	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28773535	1.00[EUR][1000 genomes]
rs28820003	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs3779515	0.83[YRI][hapmap]
rs3779516	0.83[YRI][hapmap]
rs58842751	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59750244	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6948021	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6949887	0.86[YRI][hapmap];0.85[AFR][1000 genomes]
rs6954109	0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6962621	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6967711	1.00[EUR][1000 genomes]
rs6975642	0.91[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73413894	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73415704	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs73415717	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs73415730	1.00[EUR][1000 genomes]
rs73415786	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73415801	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73417705	1.00[EUR][1000 genomes]
rs73417718	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7777446	0.91[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7777906	0.83[YRI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7810496	1.00[EUR][1000 genomes]
rs9655777	0.91[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9656090	0.91[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103763800-103815000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:103764000-103829800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr7:103764400-103820200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr7:103765600-103815000	Weak transcription	Brain Angular Gyrus	brain
5	chr7:103765600-103840200	Weak transcription	Small Intestine	intestine
6	chr7:103766200-103816000	Weak transcription	Brain Substantia Nigra	brain
7	chr7:103766200-103823600	Weak transcription	Esophagus	oesophagus
8	chr7:103766200-103838400	Weak transcription	Spleen	Spleen
9	chr7:103766400-103822600	Weak transcription	Colon Smooth Muscle	Colon
10	chr7:103767200-103829200	Weak transcription	Gastric	stomach
11	chr7:103767200-103843600	Weak transcription	Right Ventricle	heart
12	chr7:103767600-103820200	Weak transcription	Brain Germinal Matrix	brain
13	chr7:103769200-103822600	Weak transcription	Fetal Kidney	kidney
14	chr7:103771800-103807200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr7:103771800-103820000	Weak transcription	NHEK	skin
16	chr7:103773200-103822800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr7:103775200-103829200	Weak transcription	Lung	lung
18	chr7:103776800-103820200	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr7:103776800-103822800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr7:103777000-103819600	Weak transcription	Fetal Brain Female	brain
21	chr7:103777200-103819400	Weak transcription	GM12878-XiMat	blood
22	chr7:103777400-103819800	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr7:103779000-103806800	Weak transcription	NH-A	brain
24	chr7:103779200-103811600	Weak transcription	NHDF-Ad	bronchial
25	chr7:103779200-103815000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr7:103779200-103815000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr7:103781600-103822800	Weak transcription	HSMMtube	muscle
28	chr7:103781800-103822400	Weak transcription	Fetal Muscle Trunk	muscle
29	chr7:103783600-103812000	Weak transcription	HUVEC	blood vessel
30	chr7:103791200-103822800	Weak transcription	Brain Anterior Caudate	brain
31	chr7:103791400-103811000	Weak transcription	Fetal Lung	lung
32	chr7:103791800-103819200	Weak transcription	HepG2	liver
33	chr7:103792800-103815000	Weak transcription	Aorta	Aorta
34	chr7:103796400-103843600	Weak transcription	Fetal Brain Male	brain
35	chr7:103797200-103847000	Weak transcription	Fetal Heart	heart
36	chr7:103797400-103822600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr7:103797600-103817000	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr7:103798400-103815000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr7:103798400-103829600	Weak transcription	Rectal Smooth Muscle	rectum
40	chr7:103798600-103812400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr7:103798600-103819600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr7:103799400-103808400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chr7:103799400-103809000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr7:103799800-103805600	Strong transcription	K562	blood
45	chr7:103800000-103807400	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr7:103800000-103812400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr7:103800000-103822200	Weak transcription	Stomach Smooth Muscle	stomach
48	chr7:103800200-103808000	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr7:103800200-103815000	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr7:103800800-103829600	Weak transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links