Variant report

Variant	rs11982980
Chromosome Location	chr7:102039559-102039560
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:102039108..102041457-chr7:102072250..102073986,2	MCF-7	breast:
2	chr7:101928063..101931419-chr7:102036448..102039604,3	K562	blood:
3	chr7:101924242..101933059-chr7:102034727..102040076,14	MCF-7	breast:
4	chr7:102038531..102040134-chr7:102059494..102061568,2	MCF-7	breast:
5	chr7:102035400..102038391-chr7:102038531..102040962,3	MCF-7	breast:
6	chr7:102035208..102038207-chr7:102038260..102040994,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000160991	Chromatin interaction
ENSG00000160999	Chromatin interaction
ENSG00000128563	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10225683	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10226565	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10233236	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10233461	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10235407	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10237343	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10239657	0.86[EUR][1000 genomes]
rs10243209	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10246324	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10249217	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10249222	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10249581	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10255036	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10268289	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10268970	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10276094	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10277996	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10278274	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11983129	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12672132	0.81[EUR][1000 genomes]
rs17135197	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1983476	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1997164	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2103229	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2410990	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2411005	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28427402	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28539797	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28879187	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56295031	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6465859	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6947435	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6951185	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6953087	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6958795	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6968325	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6970496	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6974177	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7384178	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7385200	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7787493	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1814780	chr7:101912320-102375950	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv1819566	chr7:101912320-102375950	Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	esv1822347	chr7:101912320-102375950	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	esv1825708	chr7:101912320-102375950	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
5	esv1842898	chr7:101912320-102375950	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
6	esv1847418	chr7:101912320-102375950	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
7	nsv427798	chr7:101912320-102375950	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
8	nsv428182	chr7:101912320-102375950	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
9	nsv1016563	chr7:101912320-102695860	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
10	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
11	nsv1029079	chr7:101939998-102112371	Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
12	esv1818954	chr7:101957513-102328097	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
13	esv1828190	chr7:101966669-102439077	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
14	esv1829377	chr7:101970299-102330884	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
15	nsv831083	chr7:101981005-102295869	Active TSS Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
16	esv1806297	chr7:101981544-102330884	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
17	esv1810415	chr7:101993063-102375950	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
18	esv1811751	chr7:101993063-102375950	Enhancers Genic enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
19	esv1829118	chr7:101993063-102375950	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
20	esv1833155	chr7:101993063-102375950	Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11982980	ORAI2	cis	Whole Blood	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102037600-102043600	Weak transcription	Aorta	Aorta
2	chr7:102037800-102039600	Weak transcription	A549	lung
3	chr7:102037800-102039800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:102037800-102039800	Weak transcription	Lung	lung
5	chr7:102037800-102044000	Weak transcription	Esophagus	oesophagus
6	chr7:102037800-102044800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr7:102037800-102045200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:102037800-102051400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr7:102038000-102039600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr7:102038000-102039600	Weak transcription	Colonic Mucosa	Colon
11	chr7:102038000-102039600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr7:102038000-102039600	Weak transcription	Fetal Brain Female	brain
13	chr7:102038000-102039600	Weak transcription	Fetal Kidney	kidney
14	chr7:102038000-102039600	Weak transcription	Fetal Lung	lung
15	chr7:102038000-102039600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr7:102038000-102039600	Weak transcription	GM12878-XiMat	blood
17	chr7:102038000-102039600	Weak transcription	HMEC	breast
18	chr7:102038000-102039600	Weak transcription	NH-A	brain
19	chr7:102038000-102039600	Weak transcription	NHEK	skin
20	chr7:102038000-102039800	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr7:102038000-102039800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr7:102038000-102039800	Weak transcription	Primary hematopoietic stem cells	blood
23	chr7:102038000-102039800	Weak transcription	Brain Angular Gyrus	brain
24	chr7:102038000-102039800	Weak transcription	Brain Germinal Matrix	brain
25	chr7:102038000-102039800	Weak transcription	Brain Hippocampus Middle	brain
26	chr7:102038000-102039800	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr7:102038000-102039800	Weak transcription	Ovary	ovary
28	chr7:102038000-102039800	Weak transcription	Pancreas	Pancrea
29	chr7:102038000-102039800	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr7:102038000-102039800	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr7:102038000-102039800	Weak transcription	HUVEC	blood vessel
32	chr7:102038000-102039800	Weak transcription	NHDF-Ad	bronchial
33	chr7:102038000-102040000	Weak transcription	Right Ventricle	heart
34	chr7:102038000-102041600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr7:102038000-102042400	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr7:102038000-102044800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr7:102038000-102045800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr7:102038000-102046200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr7:102038000-102046400	Weak transcription	Fetal Heart	heart
40	chr7:102038000-102046400	Weak transcription	Small Intestine	intestine
41	chr7:102038000-102048000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr7:102038000-102048600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr7:102038000-102049800	Weak transcription	Psoas Muscle	Psoas
44	chr7:102038000-102066800	Weak transcription	Stomach Mucosa	stomach
45	chr7:102038200-102039600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr7:102038200-102039600	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr7:102038200-102039600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr7:102038200-102039600	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr7:102038200-102039600	Weak transcription	Liver	Liver
50	chr7:102038200-102039600	Weak transcription	Rectal Mucosa Donor 31	rectum

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