Variant report
| Variant | rs11983548 |
|---|---|
| Chromosome Location | chr7:126439759-126439760 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs11972390 | 1.00[AMR][1000 genomes] |
| rs11973715 | 0.92[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs11978035 | 1.00[YRI][hapmap] |
| rs11978791 | 1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11981611 | 0.89[AFR][1000 genomes] |
| rs11983585 | 1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11984090 | 1.00[YRI][hapmap] |
| rs55774132 | 0.95[AFR][1000 genomes] |
| rs56813278 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58042731 | 1.00[AMR][1000 genomes] |
| rs61755404 | 0.92[AFR][1000 genomes] |
| rs6948817 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73720780 | 0.92[AFR][1000 genomes] |
| rs73720781 | 0.92[AFR][1000 genomes] |
| rs73720785 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73720798 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73723512 | 1.00[AMR][1000 genomes] |
| rs7778713 | 1.00[YRI][hapmap];0.92[AFR][1000 genomes] |
| rs7796521 | 1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7809596 | 0.92[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv529300 | chr7:125669493-126587858 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv1032938 | chr7:126067684-126587859 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv539119 | chr7:126067684-126587859 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 4 | nsv889187 | chr7:126219766-126478190 | Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 5 | nsv1032612 | chr7:126417533-126456282 | Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
