Variant report

Variant	rs11986093
Chromosome Location	chr8:11022427-11022428
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10102701	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10282848	1.00[CEU][hapmap]
rs17152921	1.00[CEU][hapmap]
rs17152930	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17152949	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17725809	1.00[CEU][hapmap]
rs28661649	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4270924	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7818911	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7837437	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9329237	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	esv1815171	chr8:10940039-11128712	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1025426	chr8:10942929-11037903	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1026331	chr8:10955941-11046394	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
7	nsv519941	chr8:11016889-11039816	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10966400-11026200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:11006800-11026200	Weak transcription	HSMM	muscle
3	chr8:11009200-11024800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr8:11013400-11026400	Weak transcription	Esophagus	oesophagus
5	chr8:11013600-11028800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr8:11016600-11032200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr8:11017400-11025400	Weak transcription	HSMMtube	muscle
8	chr8:11020200-11023400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr8:11021000-11022600	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr8:11021000-11022600	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr8:11021200-11022600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr8:11021200-11023000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr8:11021400-11022600	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr8:11021400-11022600	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr8:11021400-11022600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr8:11021400-11023000	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr8:11021800-11024800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr8:11021800-11025000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr8:11021800-11026200	Weak transcription	Pancreas	Pancrea
20	chr8:11021800-11026400	Weak transcription	Gastric	stomach
21	chr8:11022000-11022600	Enhancers	H1 Cell Line	embryonic stem cell
22	chr8:11022000-11022600	Enhancers	GM12878-XiMat	blood
23	chr8:11022000-11025600	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr8:11022000-11026000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr8:11022000-11026400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr8:11022200-11024400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr8:11022400-11022600	Enhancers	H9 Cell Line	embryonic stem cell
28	chr8:11022400-11022800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr8:11022400-11025400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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