Variant report

Variant	rs11987270
Chromosome Location	chr8:62405903-62405904
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10088453	1.00[MEX][hapmap]
rs10090149	1.00[MEX][hapmap]
rs10102451	1.00[MEX][hapmap]
rs10216566	1.00[MEX][hapmap]
rs11539105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11987285	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11991141	1.00[MEX][hapmap]
rs11993631	0.81[AFR][1000 genomes]
rs16927192	1.00[MEX][hapmap]
rs2083437	1.00[MEX][hapmap]
rs57787482	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57869223	1.00[EUR][1000 genomes]
rs58092797	1.00[EUR][1000 genomes]
rs58250124	1.00[EUR][1000 genomes]
rs58325626	1.00[EUR][1000 genomes]
rs59038492	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59721840	1.00[EUR][1000 genomes]
rs59924634	1.00[EUR][1000 genomes]
rs60140341	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60272015	1.00[EUR][1000 genomes]
rs61217047	1.00[AMR][1000 genomes]
rs61565764	1.00[EUR][1000 genomes]
rs61704340	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6471952	1.00[MEX][hapmap]
rs6987677	1.00[EUR][1000 genomes]
rs6993580	1.00[EUR][1000 genomes]
rs7003083	1.00[MEX][hapmap]
rs7016371	1.00[EUR][1000 genomes]
rs73259354	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73259357	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73259365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73259370	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73259374	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73259381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73259382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73259398	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73259402	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73261103	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73261115	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73263152	1.00[EUR][1000 genomes]
rs73263158	1.00[EUR][1000 genomes]
rs73263168	1.00[EUR][1000 genomes]
rs73263187	1.00[EUR][1000 genomes]
rs73263194	1.00[EUR][1000 genomes]
rs73265171	1.00[EUR][1000 genomes]
rs73265199	1.00[EUR][1000 genomes]
rs73682259	1.00[EUR][1000 genomes]
rs73682260	1.00[EUR][1000 genomes]
rs73682269	1.00[EUR][1000 genomes]
rs745206	1.00[MEX][hapmap]
rs7830460	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948922	chr8:61818964-62475097	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1024432	chr8:62086247-62898782	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1027742	chr8:62206883-62613533	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv539633	chr8:62206883-62613533	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv1021377	chr8:62214279-62596721	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv539634	chr8:62214279-62596721	ZNF genes & repeats Genic enhancers Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv1029046	chr8:62224341-62535277	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv932198	chr8:62336705-62914562	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	nsv521898	chr8:62364663-62419120	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62393600-62408200	Weak transcription	Fetal Brain Female	brain
2	chr8:62400600-62412000	Weak transcription	A549	lung

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