Variant report

Variant	rs11989489
Chromosome Location	chr8:49807033-49807034
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11986908	1.00[AMR][1000 genomes]
rs11987053	1.00[AMR][1000 genomes]
rs11988057	1.00[AMR][1000 genomes]
rs11989446	1.00[AMR][1000 genomes]
rs11990190	1.00[AMR][1000 genomes]
rs11990660	1.00[AMR][1000 genomes]
rs11991072	1.00[AMR][1000 genomes]
rs11992534	1.00[AMR][1000 genomes]
rs11994806	1.00[AMR][1000 genomes]
rs11996439	1.00[AMR][1000 genomes]
rs11996810	1.00[AMR][1000 genomes]
rs11998047	1.00[AMR][1000 genomes]
rs16939327	1.00[AMR][1000 genomes]
rs16939335	1.00[AMR][1000 genomes]
rs16939391	1.00[AMR][1000 genomes]
rs16939404	1.00[AMR][1000 genomes]
rs16939407	1.00[AMR][1000 genomes]
rs16939409	1.00[AMR][1000 genomes]
rs6980664	1.00[AMR][1000 genomes]
rs6986206	1.00[AMR][1000 genomes]
rs6989872	1.00[AMR][1000 genomes]
rs6991176	1.00[AMR][1000 genomes]
rs6997593	1.00[AMR][1000 genomes]
rs7005086	1.00[AMR][1000 genomes]
rs7017854	1.00[AMR][1000 genomes]
rs7822994	1.00[AMR][1000 genomes]
rs7842971	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890854	chr8:49738821-49838908	Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49802000-49809400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr8:49802000-49814800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr8:49804200-49811200	Weak transcription	Fetal Kidney	kidney
4	chr8:49804600-49811400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr8:49804800-49811600	Weak transcription	HMEC	breast
6	chr8:49805000-49811400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr8:49805400-49809400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr8:49805600-49811400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:49805600-49811600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr8:49805800-49810600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr8:49806400-49807200	Enhancers	Fetal Lung	lung
12	chr8:49806400-49807600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr8:49806600-49808800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr8:49806800-49807200	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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