Variant report

Variant	rs11990660
Chromosome Location	chr8:49895655-49895656
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11987053	1.00[AMR][1000 genomes]
rs11988057	1.00[AMR][1000 genomes]
rs11989446	1.00[AMR][1000 genomes]
rs11989489	1.00[AMR][1000 genomes]
rs11990190	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11991072	1.00[AMR][1000 genomes]
rs11992534	1.00[AMR][1000 genomes]
rs11994806	1.00[AMR][1000 genomes]
rs11996810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11998047	1.00[AMR][1000 genomes]
rs16939327	1.00[AMR][1000 genomes]
rs16939335	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16939391	1.00[AMR][1000 genomes]
rs16939404	1.00[AMR][1000 genomes]
rs16939407	1.00[AMR][1000 genomes]
rs16939409	1.00[AMR][1000 genomes]
rs16939472	1.00[AMR][1000 genomes]
rs6980664	1.00[AMR][1000 genomes]
rs6986206	1.00[AMR][1000 genomes]
rs6989872	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6991176	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6997593	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7005086	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7017854	1.00[AMR][1000 genomes]
rs7842971	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024584	chr8:49879137-49906780	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
2	nsv6181	chr8:49885342-49930514	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49892200-49896600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr8:49892600-49896000	Weak transcription	Fetal Brain Male	brain
3	chr8:49892600-49896800	Weak transcription	Hela-S3	cervix
4	chr8:49895600-49896400	Enhancers	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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