Variant report

Variant	rs11991271
Chromosome Location	chr8:10963902-10963903
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AF131215.2.1-1	chr8:10962201-10964214	ENSG00000269918.1
2	lnc-AF131215.2.1-1	chr8:10962658-10964223	NONHSAT125034

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10108967	1.00[EUR][1000 genomes]
rs11984987	1.00[EUR][1000 genomes]
rs11986294	1.00[EUR][1000 genomes]
rs11992161	1.00[EUR][1000 genomes]
rs28417024	1.00[EUR][1000 genomes]
rs28516856	1.00[EUR][1000 genomes]
rs28519973	1.00[EUR][1000 genomes]
rs28579363	1.00[EUR][1000 genomes]
rs28594876	1.00[EUR][1000 genomes]
rs28688244	1.00[EUR][1000 genomes]
rs28712616	1.00[EUR][1000 genomes]
rs6651506	1.00[EUR][1000 genomes]
rs6651507	1.00[EUR][1000 genomes]
rs6991930	0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	esv1815171	chr8:10940039-11128712	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1025426	chr8:10942929-11037903	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1026331	chr8:10955941-11046394	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1027845	chr8:10959666-10995565	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10950600-10965000	Weak transcription	Gastric	stomach
2	chr8:10955200-10968000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:10956800-10964800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr8:10957200-10964800	Weak transcription	Primary B cells from peripheral blood	blood
5	chr8:10958200-10965000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr8:10958200-10967200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr8:10958200-10970200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr8:10958400-10965200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr8:10958400-10974800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr8:10958600-10964800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr8:10958600-10965000	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr8:10958600-10971200	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr8:10958600-10971200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr8:10958800-10967400	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr8:10959600-10964800	Weak transcription	Pancreas	Pancrea
16	chr8:10960400-10967000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr8:10960400-10968400	Weak transcription	Spleen	Spleen
18	chr8:10960800-10965200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr8:10960800-10970800	Weak transcription	HSMM	muscle
20	chr8:10961200-10964600	Weak transcription	Fetal Intestine Small	intestine
21	chr8:10961200-10964800	Weak transcription	Fetal Stomach	stomach
22	chr8:10961200-10975400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr8:10961600-10970600	Weak transcription	Fetal Intestine Large	intestine
24	chr8:10961800-10968800	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr8:10961800-10971400	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr8:10962000-10968000	Weak transcription	GM12878-XiMat	blood
27	chr8:10962200-10964400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr8:10962400-10964800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr8:10962400-10964800	Weak transcription	HMEC	breast
30	chr8:10962400-10967600	Weak transcription	Stomach Smooth Muscle	stomach
31	chr8:10962400-10969600	Weak transcription	NH-A	brain
32	chr8:10962600-10964000	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr8:10962800-10965000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr8:10963000-10964800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr8:10963000-10981200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr8:10963200-10967200	Weak transcription	Primary T cells from cord blood	blood
37	chr8:10963200-10970400	Weak transcription	Primary B cells from cord blood	blood
38	chr8:10963400-10965000	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr8:10963400-10965000	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr8:10963400-10971400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr8:10963600-10964000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr8:10963600-10966600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr8:10963600-10971200	Weak transcription	HSMMtube	muscle
44	chr8:10963600-10973600	Weak transcription	Lung	lung
45	chr8:10963600-10974800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr8:10963800-10965600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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