Variant report

Variant	rs1199155
Chromosome Location	chr1:152459124-152459125
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:152458591..152459582-chr1:152505807..152506392,3	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1199154	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1199157	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12563567	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12568980	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1577819	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16834087	1.00[JPT][hapmap]
rs16834142	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16834145	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16834153	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16834168	0.94[GIH][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1885530	0.83[ASN][1000 genomes]
rs1923508	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1984725	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2297760	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55670708	0.84[ASN][1000 genomes]
rs6587678	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6662563	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7513266	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7521139	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7521224	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7521430	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7544342	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7548813	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7552220	1.00[CEU][hapmap];0.92[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916016	chr1:152337775-152590520	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv872443	chr1:152400055-152459747	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1014393	chr1:152451935-152491693	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv2750810	chr1:152453669-152660927	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1199155	S100A11	cis	lymphoblastoid	seeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:152458400-152459400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr1:152458400-152459400	Weak transcription	HMEC	breast
3	chr1:152458400-152459400	Weak transcription	NHEK	skin
4	chr1:152459000-152459800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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