Variant report

Variant	rs11991808
Chromosome Location	chr8:63895890-63895891
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-32K4.2.1-6	chr8:63890420-63897460	NONHSAT126909
2	lnc-RP11-32K4.2.1-6	chr8:63894179-63897460	NONHSAT126910

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11993344	1.00[EUR][1000 genomes]
rs1351350	1.00[EUR][1000 genomes]
rs1378519	1.00[EUR][1000 genomes]
rs1455577	1.00[EUR][1000 genomes]
rs1480117	1.00[EUR][1000 genomes]
rs2353365	1.00[EUR][1000 genomes]
rs2883147	1.00[EUR][1000 genomes]
rs4270960	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57145420	1.00[EUR][1000 genomes]
rs57317205	1.00[EUR][1000 genomes]
rs58136897	1.00[EUR][1000 genomes]
rs60595425	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61143666	1.00[EUR][1000 genomes]
rs61144659	1.00[EUR][1000 genomes]
rs6472082	1.00[EUR][1000 genomes]
rs6982424	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6986007	1.00[EUR][1000 genomes]
rs7000002	1.00[EUR][1000 genomes]
rs7000089	1.00[EUR][1000 genomes]
rs7003391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7014890	1.00[EUR][1000 genomes]
rs73254921	1.00[EUR][1000 genomes]
rs73254933	1.00[EUR][1000 genomes]
rs73254954	1.00[EUR][1000 genomes]
rs73266757	1.00[EUR][1000 genomes]
rs73266758	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73266781	1.00[EUR][1000 genomes]
rs73268678	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73268679	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73268681	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73270521	1.00[EUR][1000 genomes]
rs73270530	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73270590	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73272416	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7823443	1.00[EUR][1000 genomes]
rs7831801	1.00[EUR][1000 genomes]
rs7833923	1.00[EUR][1000 genomes]
rs7837948	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1033527	chr8:63673915-64073735	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv890964	chr8:63848556-63898146	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv6227	chr8:63892087-63936952	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63895200-63896200	Enhancers	Fetal Intestine Large	intestine
2	chr8:63895400-63896200	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr8:63895400-63896400	Enhancers	Fetal Intestine Small	intestine
4	chr8:63895400-63896600	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr8:63895400-63896800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr8:63895400-63896800	Enhancers	Fetal Kidney	kidney
7	chr8:63895600-63896200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
8	chr8:63895800-63896600	Enhancers	Fetal Brain Male	brain
9	chr8:63895800-63896600	Enhancers	Fetal Brain Female	brain
10	chr8:63895800-63896600	Enhancers	HepG2	liver

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