Variant report

Variant	rs11993685
Chromosome Location	chr8:63559547-63559548
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10106468	1.00[AMR][1000 genomes]
rs11984714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11986586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11986711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11991931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11993778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34051124	0.95[AFR][1000 genomes]
rs55665921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55845492	1.00[AMR][1000 genomes]
rs56055262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56095987	0.94[AFR][1000 genomes]
rs73256994	1.00[AMR][1000 genomes]
rs73256996	1.00[AMR][1000 genomes]
rs73256998	1.00[AMR][1000 genomes]
rs73683354	0.94[AFR][1000 genomes]
rs73683359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683361	1.00[AFR][1000 genomes]
rs73684094	1.00[AMR][1000 genomes]
rs73684095	1.00[AMR][1000 genomes]
rs73685416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685418	0.94[AFR][1000 genomes]
rs73685424	0.94[AFR][1000 genomes]
rs73685426	0.94[AFR][1000 genomes]
rs73685427	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831340	chr8:63515126-63702660	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv890960	chr8:63516962-63629549	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63557800-63559600	Enhancers	Brain Germinal Matrix	brain
2	chr8:63558200-63561200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr8:63558800-63559800	Enhancers	HUES48 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links