Variant report

Variant	rs11997540
Chromosome Location	chr8:63599017-63599018
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10086439	1.00[ASN][1000 genomes]
rs11986003	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11988844	1.00[ASN][1000 genomes]
rs11990729	1.00[ASN][1000 genomes]
rs11993139	1.00[ASN][1000 genomes]
rs11994250	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13248275	1.00[ASN][1000 genomes]
rs13260313	1.00[ASN][1000 genomes]
rs13268135	1.00[ASN][1000 genomes]
rs13439148	1.00[ASN][1000 genomes]
rs13439149	1.00[ASN][1000 genomes]
rs16929324	1.00[ASN][1000 genomes]
rs16929355	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929366	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929379	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929380	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929392	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929407	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929409	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929424	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16929428	1.00[ASN][1000 genomes]
rs17840589	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2127562	1.00[ASN][1000 genomes]
rs2127563	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2127564	1.00[ASN][1000 genomes]
rs28608015	1.00[ASN][1000 genomes]
rs34160114	1.00[ASN][1000 genomes]
rs35029520	1.00[ASN][1000 genomes]
rs35915553	1.00[ASN][1000 genomes]
rs4562311	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56083055	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57723519	0.94[EUR][1000 genomes]
rs57786242	1.00[ASN][1000 genomes]
rs59113187	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60508325	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60781553	1.00[ASN][1000 genomes]
rs61408776	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472043	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6997907	1.00[ASN][1000 genomes]
rs7007446	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7016043	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73264872	0.84[EUR][1000 genomes]
rs73682630	1.00[ASN][1000 genomes]
rs73682631	1.00[ASN][1000 genomes]
rs73683352	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73685419	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7820024	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7839654	1.00[ASN][1000 genomes]
rs961828	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9969432	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831340	chr8:63515126-63702660	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv890960	chr8:63516962-63629549	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63572400-63602600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:63587400-63602600	Weak transcription	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links