Variant report
| Variant | rs11998777 |
|---|---|
| Chromosome Location | chr9:17718418-17718419 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs10118867 | 0.95[ASN][1000 genomes] |
| rs10963216 | 1.00[YRI][hapmap] |
| rs12000449 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs12337611 | 0.95[ASN][1000 genomes] |
| rs12346670 | 0.95[ASN][1000 genomes] |
| rs12352499 | 0.95[ASN][1000 genomes] |
| rs16935876 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2209441 | 1.00[CHB][hapmap] |
| rs3780230 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs3808692 | 1.00[YRI][hapmap] |
| rs3824379 | 1.00[YRI][hapmap] |
| rs4515654 | 1.00[YRI][hapmap] |
| rs5014596 | 1.00[CHB][hapmap] |
| rs6475169 | 1.00[CHB][hapmap] |
| rs7032215 | 1.00[CHB][hapmap] |
| rs7047514 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1016971 | chr9:17648242-17720176 | Enhancers Weak transcription Active TSS Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
| 2 | nsv1021022 | chr9:17649360-17723730 | Enhancers Weak transcription Flanking Active TSS Active TSS | n/a | n/a | inside rSNPs | diseases |
| 3 | nsv892675 | chr9:17694823-17790526 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv466279 | chr9:17699981-17726581 | Weak transcription Enhancers Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
| 5 | nsv613705 | chr9:17699981-17726581 | Enhancers Flanking Active TSS Weak transcription | n/a | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
