Variant report

Variant	rs11999421
Chromosome Location	chr9:16332785-16332786
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12002157	1.00[AMR][1000 genomes]
rs12003391	1.00[AMR][1000 genomes]
rs12003506	1.00[AMR][1000 genomes]
rs12004108	1.00[AMR][1000 genomes]
rs12006220	1.00[AMR][1000 genomes]
rs35750662	1.00[AMR][1000 genomes]
rs57271732	1.00[AMR][1000 genomes]
rs59322167	1.00[AMR][1000 genomes]
rs7038963	1.00[AMR][1000 genomes]
rs7047223	1.00[AMR][1000 genomes]
rs73645984	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv429999	chr9:16102066-16389100	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv892644	chr9:16275107-16389006	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv892645	chr9:16292669-16368732	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv613668	chr9:16310620-16377360	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16315400-16335600	Weak transcription	Right Ventricle	heart
2	chr9:16326200-16335800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:16330200-16335600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr9:16330200-16335600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr9:16330200-16335800	Weak transcription	Right Atrium	heart
6	chr9:16330200-16336000	Weak transcription	Esophagus	oesophagus
7	chr9:16330400-16333400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr9:16330400-16333600	Weak transcription	NHDF-Ad	bronchial
9	chr9:16330400-16333800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr9:16330400-16335200	Weak transcription	NHLF	lung
11	chr9:16330400-16335600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr9:16330400-16335600	Weak transcription	Ovary	ovary
13	chr9:16330400-16335600	Weak transcription	NH-A	brain
14	chr9:16331200-16333400	Weak transcription	HSMM	muscle
15	chr9:16331200-16335400	Weak transcription	Osteobl	bone
16	chr9:16331600-16334200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
17	chr9:16331800-16332800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr9:16332000-16336000	Weak transcription	Fetal Lung	lung
19	chr9:16332600-16333600	Weak transcription	HSMMtube	muscle
20	chr9:16332600-16334600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr9:16332600-16334600	Enhancers	Fetal Muscle Leg	muscle
22	chr9:16332600-16334800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links