Variant report

Variant	rs12000789
Chromosome Location	chr9:71076920-71076921
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10116868	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10511957	0.82[CEU][hapmap];0.97[EUR][1000 genomes]
rs10511958	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10735596	0.86[JPT][hapmap]
rs10780955	0.82[CEU][hapmap]
rs10780960	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs10780962	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10780963	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10780967	0.82[CEU][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs10868795	0.86[JPT][hapmap]
rs10868803	0.81[JPT][hapmap]
rs10868851	0.84[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10868852	0.84[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10868876	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10868877	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10868879	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10868922	0.82[CEU][hapmap]
rs10868984	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs11142075	0.86[JPT][hapmap]
rs11142199	0.86[JPT][hapmap]
rs11142468	0.83[ASN][1000 genomes]
rs11142541	0.87[EUR][1000 genomes]
rs11142543	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11142549	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11142616	0.82[CEU][hapmap]
rs11142650	0.85[JPT][hapmap]
rs11792137	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs11794424	0.82[CEU][hapmap];0.97[EUR][1000 genomes]
rs12353500	0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs1353009	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1353010	0.87[EUR][1000 genomes]
rs1492824	0.86[JPT][hapmap]
rs17053702	0.82[CEU][hapmap];0.97[EUR][1000 genomes]
rs17054803	0.82[CEU][hapmap];0.97[EUR][1000 genomes]
rs17056009	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs17059173	0.82[CEU][hapmap];0.97[EUR][1000 genomes]
rs2026033	0.86[JPT][hapmap]
rs265072	0.81[EUR][1000 genomes]
rs265083	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs265087	0.85[CEU][hapmap]
rs35011246	1.00[ASN][1000 genomes]
rs4237244	0.83[ASN][1000 genomes]
rs4237245	0.82[CEU][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs4744594	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs4745041	0.85[CEU][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6560144	0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7020465	0.86[JPT][hapmap]
rs7022220	0.85[JPT][hapmap]
rs7022394	0.96[ASN][1000 genomes]
rs7025140	0.86[JPT][hapmap]
rs7026163	0.91[ASN][1000 genomes]
rs7030076	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7031619	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7035038	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7039149	0.82[CEU][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs7039686	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7042123	0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7042601	0.82[ASN][1000 genomes]
rs7042721	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7855134	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs7860270	0.83[ASN][1000 genomes]
rs7866604	0.82[CEU][hapmap]
rs7875408	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427847	chr9:70318730-71153527	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71051200-71091800	Weak transcription	Psoas Muscle	Psoas
2	chr9:71065800-71080000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr9:71067800-71077000	Weak transcription	Lung	lung
4	chr9:71070200-71087000	Weak transcription	Aorta	Aorta
5	chr9:71070800-71100800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr9:71071800-71078200	Enhancers	Colon Smooth Muscle	Colon
7	chr9:71073000-71077200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:71073400-71077000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr9:71075200-71098800	Weak transcription	Fetal Muscle Trunk	muscle
10	chr9:71075600-71077800	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr9:71075600-71077800	Enhancers	Right Ventricle	heart
12	chr9:71075800-71078400	Enhancers	Fetal Stomach	stomach
13	chr9:71076000-71077600	Enhancers	Left Ventricle	heart
14	chr9:71076000-71077600	Enhancers	Ovary	ovary
15	chr9:71076000-71077800	Enhancers	Right Atrium	heart
16	chr9:71076200-71078200	Enhancers	HSMMtube	muscle
17	chr9:71076400-71077200	Weak transcription	Stomach Smooth Muscle	stomach
18	chr9:71076400-71077600	Enhancers	Fetal Muscle Leg	muscle
19	chr9:71076400-71078600	Enhancers	Fetal Lung	lung
20	chr9:71076400-71098800	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr9:71076800-71077000	Flanking Active TSS	Rectal Smooth Muscle	rectum
22	chr9:71076800-71077600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr9:71076800-71077600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
24	chr9:71076800-71077800	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr9:71076800-71078200	Enhancers	Fetal Heart	heart

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