Variant report

Variant	rs12000908
Chromosome Location	chr9:72169491-72169492
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11139414	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11999656	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12000827	1.00[CEU][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12006272	0.85[EUR][1000 genomes]
rs12552474	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12553894	0.91[YRI][hapmap];0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12553941	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12554978	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12555100	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1411439	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1411441	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1411442	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3927537	0.89[EUR][1000 genomes]
rs4636268	0.85[EUR][1000 genomes]
rs56654380	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57512468	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58638129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58667541	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58898534	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59791186	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60759202	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7036538	0.85[EUR][1000 genomes]
rs72717199	0.85[EUR][1000 genomes]
rs72719005	0.85[EUR][1000 genomes]
rs72719017	0.85[EUR][1000 genomes]
rs72719024	0.86[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs73647250	0.85[EUR][1000 genomes]
rs73647252	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73647254	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73647255	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73647256	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73647257	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73647259	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73647260	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73647261	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73647262	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73647263	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73647264	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73647265	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73647266	0.80[EUR][1000 genomes]
rs7849601	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7861451	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817406	chr9:71675454-72179318	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1047593	chr9:71971536-72180583	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1035633	chr9:71995963-72176984	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1048650	chr9:72028458-72179847	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1039966	chr9:72057304-72181564	Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv893437	chr9:72118962-72223176	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1049390	chr9:72168645-72185751	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72163200-72185600	Weak transcription	Aorta	Aorta
2	chr9:72164400-72171000	Weak transcription	Brain Substantia Nigra	brain
3	chr9:72164400-72172400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:72164400-72172400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr9:72164600-72169600	Weak transcription	Brain Angular Gyrus	brain
6	chr9:72164800-72169800	Weak transcription	Liver	Liver
7	chr9:72169400-72170000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
8	chr9:72169400-72170400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr9:72169400-72170600	Enhancers	NH-A	brain
10	chr9:72169400-72171200	Enhancers	Osteobl	bone

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