Variant report

Variant	rs12002157
Chromosome Location	chr9:16397787-16397788
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11999110	1.00[AMR][1000 genomes]
rs11999421	1.00[AMR][1000 genomes]
rs12003506	1.00[AMR][1000 genomes]
rs12004108	1.00[AMR][1000 genomes]
rs12006220	1.00[AMR][1000 genomes]
rs35750662	1.00[AMR][1000 genomes]
rs57271732	1.00[AMR][1000 genomes]
rs59322167	1.00[AMR][1000 genomes]
rs7038963	1.00[AMR][1000 genomes]
rs7041186	1.00[AMR][1000 genomes]
rs73645984	1.00[AMR][1000 genomes]
rs7864209	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv6491	chr9:16389836-16398649	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16392000-16406800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:16394000-16406800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:16395400-16399800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr9:16396800-16398800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:16396800-16398800	Weak transcription	Osteobl	bone
6	chr9:16396800-16399800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr9:16397000-16398800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:16397200-16398600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr9:16397200-16399600	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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