Variant report

Variant	rs12002715
Chromosome Location	chr9:504221-504222
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr9:503808-504755	ECC-1	luminal epithelium:	n/a	n/a
2	POLR2A	chr9:504159-505946	MCF10A-Er-Src	breast:	n/a	n/a
3	MAX	chr9:504187-504704	GM12878	blood:	n/a	n/a
4	POLR2A	chr9:504167-504919	HCT-116	colon:	n/a	n/a
5	TFAP2A	chr9:503976-505043	Hela-S3	cervix:	n/a	chr9:504377-504389 chr9:504829-504839 chr9:504829-504839 chr9:504829-504839 chr9:504377-504389 chr9:504427-504438 chr9:504840-504855 chr9:504944-504956 chr9:504377-504389 chr9:504377-504389 chr9:504427-504439 chr9:504338-504349 chr9:504339-504354 chr9:504829-504839
6	POLR2A	chr9:503931-504926	A549	lung:	n/a	n/a
7	POLR2A	chr9:504214-504845	H1-hESC	embryonic stem cell:	n/a	n/a
8	MYBL2	chr9:504019-504320	HepG2	liver:	n/a	n/a
9	RCOR1	chr9:503937-504912	K562	blood:	n/a	n/a
10	HMGN3	chr9:503958-505121	K562	blood:	n/a	n/a
11	ZNF263	chr9:503512-504620	K562	blood:	n/a	n/a
12	ZNF143	chr9:503955-504395	H1-hESC	embryonic stem cell:	n/a	n/a
13	E2F4	chr9:503864-504993	MCF10A-Er-Src	breast:	n/a	chr9:504408-504417 chr9:504611-504621 chr9:504837-504847 chr9:504857-504868 chr9:504904-504914 chr9:504601-504613 chr9:504857-504867
14	MAX	chr9:503766-504905	MCF-7	breast:	n/a	chr9:504020-504030
15	POLR2A	chr9:504187-504692	NB4	blood:	n/a	n/a
16	MAX	chr9:503922-504911	K562	blood:	n/a	chr9:504020-504030
17	SETDB1	chr9:504108-504381	U2OS	brain:	n/a	n/a
18	E2F6	chr9:503686-504743	H1-hESC	embryonic stem cell:	n/a	chr9:504408-504417 chr9:504611-504621 chr9:504601-504613
19	POLR2A	chr9:504031-505222	ECC-1	luminal epithelium:	n/a	n/a
20	CCNT2	chr9:503997-505117	K562	blood:	n/a	chr9:504819-504828
21	POLR2A	chr9:504091-504803	Hela-S3	cervix:	n/a	n/a
22	POLR2A	chr9:503872-505094	A549	lung:	n/a	n/a
23	MYC	chr9:503995-504641	K562	blood:	n/a	chr9:504020-504030
24	NRF1	chr9:504154-504560	Hela-S3	cervix:	n/a	chr9:504404-504418 chr9:504407-504416 chr9:504406-504417 chr9:504407-504418 chr9:504407-504421
25	JUND	chr9:504028-505171	A549	lung:	n/a	n/a
26	HA-E2F1	chr9:503865-505210	MCF-7	breast:	n/a	chr9:505004-505014 chr9:504408-504417 chr9:504611-504621 chr9:504837-504847 chr9:505005-505016 chr9:505004-505015 chr9:504857-504868 chr9:505005-505013 chr9:504904-504914 chr9:504601-504613 chr9:505112-505122 chr9:505005-505012 chr9:504857-504867 chr9:505005-505013
27	SIN3A	chr9:503918-505882	H1-hESC	embryonic stem cell:	n/a	chr9:505204-505217 chr9:504950-504963 chr9:504430-504443 chr9:505011-505022
28	GTF2F1	chr9:503848-504358	H1-hESC	embryonic stem cell:	n/a	n/a
29	POLR2A	chr9:504091-505081	A549	lung:	n/a	n/a
30	MAX	chr9:503775-504762	H1-hESC	embryonic stem cell:	n/a	chr9:504020-504030
31	POLR2A	chr9:504170-504892	Hela-S3	cervix:	n/a	n/a
32	MAX	chr9:504069-504949	HepG2	liver:	n/a	n/a
33	CTCF	chr9:503215-505107	A549	lung:	n/a	chr9:504426-504439 chr9:504065-504073 chr9:504969-504985 chr9:504060-504073
34	TFAP2C	chr9:503617-505336	Hela-S3	cervix:	n/a	n/a
35	TAF1	chr9:504179-504905	H1-hESC	embryonic stem cell:	n/a	n/a
36	MYC	chr9:504152-504458	H1-hESC	embryonic stem cell:	n/a	n/a
37	MAZ	chr9:504159-504866	K562	blood:	n/a	n/a
38	MBD4	chr9:504152-504433	HepG2	liver:	n/a	n/a
39	JUND	chr9:504046-504653	K562	blood:	n/a	n/a
40	TEAD4	chr9:504023-504345	H1-hESC	embryonic stem cell:	n/a	n/a
41	NRF1	chr9:504148-504670	SK-N-SH	brain:	n/a	chr9:504404-504418 chr9:504407-504416 chr9:504406-504417 chr9:504407-504418 chr9:504407-504421
42	SMC3	chr9:503898-504793	Hela-S3	cervix:	n/a	chr9:504669-504679
43	RCOR1	chr9:503899-504688	Hela-S3	cervix:	n/a	n/a
44	BCL3	chr9:503842-504488	A549	lung:	n/a	chr9:504175-504184 chr9:504327-504340 chr9:504456-504469
45	POLR2A	chr9:503851-505713	A549	lung:	n/a	n/a
46	POLR2A	chr9:503934-505046	MCF-7	breast:	n/a	n/a
47	TCF7L2	chr9:504192-504518	MCF-7	breast:	n/a	n/a
48	TCF12	chr9:503902-504881	ECC-1	luminal epithelium:	n/a	n/a
49	MAFK	chr9:503911-504229	Hela-S3	cervix:	n/a	n/a
50	MAX	chr9:503769-505185	A549	lung:	n/a	chr9:504020-504030 chr9:504959-504969

No.	Distal block	Cell Line	Cell type
1	chr9:490052..492255-chr9:502875..504712,2	MCF-7	breast:
2	chr9:468830..470676-chr9:503247..506779,4	MCF-7	breast:
3	chr9:468995..471572-chr9:503851..506185,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C9orf66-7	chr9:503057-504746	NONHSAT129929

Variant related genes	Relation type
KANK1	TF binding region
ENSG00000107104	Chromatin interaction
ENSG00000227155	Chromatin interaction

Extended variants
information (count: 110 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16919886	1.00[EUR][1000 genomes]
rs16920598	1.00[EUR][1000 genomes]
rs57410109	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58538496	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58677638	1.00[AMR][1000 genomes]
rs61448871	1.00[AMR][1000 genomes]
rs73369034	1.00[EUR][1000 genomes]
rs73369061	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73369068	1.00[AMR][1000 genomes]
rs73373035	1.00[EUR][1000 genomes]
rs73373036	1.00[EUR][1000 genomes]
rs73386735	1.00[AMR][1000 genomes]
rs73386751	1.00[EUR][1000 genomes]
rs7847380	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7856494	1.00[EUR][1000 genomes]
rs7860175	1.00[EUR][1000 genomes]
rs7865941	1.00[EUR][1000 genomes]
rs7865948	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:92 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949346	chr9:13091-776349	Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv2764172	chr9:40910-593899	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv949051	chr9:40910-925305	Bivalent Enhancer Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1018439	chr9:46587-518103	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv469507	chr9:199707-544450	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv492004	chr9:204090-639077	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv1031205	chr9:209254-518295	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv539827	chr9:209254-518295	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv1015338	chr9:209254-808057	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
10	nsv1034557	chr9:209254-964422	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	nsv539828	chr9:209254-964422	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
12	nsv1016963	chr9:214166-789985	Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
13	nsv539843	chr9:214166-789985	Genic enhancers Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
14	nsv1018146	chr9:214366-522996	Active TSS Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
15	nsv539859	chr9:214366-522996	Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
16	nsv1031297	chr9:214366-659340	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
17	nsv539860	chr9:214366-659340	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
18	nsv539861	chr9:214366-805666	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
19	nsv1035041	chr9:222282-654518	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
20	nsv539877	chr9:222282-654518	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
21	nsv1018491	chr9:222282-715668	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
22	nsv539878	chr9:222282-715668	Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
23	nsv1018835	chr9:236075-526981	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
24	nsv612997	chr9:238389-510546	Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
25	nsv466044	chr9:238389-634160	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
26	nsv533086	chr9:280255-753314	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
27	nsv612999	chr9:290670-526772	Enhancers Genic enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
28	nsv1019991	chr9:295237-533926	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
29	nsv429976	chr9:302324-678088	Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
30	nsv1016589	chr9:304385-730233	Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
31	nsv539886	chr9:304385-730233	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
32	nsv533964	chr9:314969-910448	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
33	nsv1022401	chr9:319961-518103	Flanking Active TSS Strong transcription Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
34	nsv1027265	chr9:325712-517545	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
35	nsv539888	chr9:325712-517545	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
36	nsv1017197	chr9:325877-519256	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
37	nsv1029858	chr9:327139-518295	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
38	nsv1028102	chr9:327139-605908	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
39	nsv1031809	chr9:327139-715668	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
40	nsv613011	chr9:333819-635677	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
41	nsv466045	chr9:334337-543631	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
42	nsv613012	chr9:334337-543631	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
43	nsv1026342	chr9:336026-544519	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
44	nsv1017374	chr9:343870-534149	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
45	nsv539889	chr9:343870-534149	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
46	nsv466046	chr9:344229-543631	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
47	nsv613013	chr9:344229-543631	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
48	nsv931598	chr9:349034-862771	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
49	nsv1027367	chr9:366387-697983	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
50	nsv1027550	chr9:366387-715668	Active TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:503200-504400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
2	chr9:503400-504400	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
3	chr9:503400-504400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
4	chr9:503400-504400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr9:503400-504400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
6	chr9:503400-504400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
7	chr9:503400-505400	Active TSS	Brain Anterior Caudate	brain
8	chr9:503400-505800	Active TSS	Esophagus	oesophagus
9	chr9:503400-506000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr9:503600-504400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
11	chr9:503600-504400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
12	chr9:503600-504400	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
13	chr9:503600-504400	Flanking Bivalent TSS/Enh	Fetal Brain Male	brain
14	chr9:503600-504400	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
15	chr9:503600-504400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
16	chr9:503600-504400	Flanking Active TSS	Right Ventricle	heart
17	chr9:503600-505600	Active TSS	H9 Cell Line	embryonic stem cell
18	chr9:503600-505800	Active TSS	Pancreatic Islets	Pancreatic Islet
19	chr9:503800-504400	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr9:503800-504400	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr9:503800-504400	Flanking Active TSS	Primary B cells from peripheral blood	blood
22	chr9:503800-504400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
23	chr9:503800-504400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
24	chr9:503800-504400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr9:503800-504400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr9:503800-504400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr9:503800-504400	Flanking Active TSS	Adipose Nuclei	Adipose
28	chr9:503800-504400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
29	chr9:503800-504400	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
30	chr9:503800-504400	Flanking Active TSS	Pancreas	Pancrea
31	chr9:503800-504400	Flanking Active TSS	GM12878-XiMat	blood
32	chr9:503800-504400	Flanking Bivalent TSS/Enh	HepG2	liver
33	chr9:503800-504400	Flanking Active TSS	HMEC	breast
34	chr9:503800-504400	Bivalent/Poised TSS	HSMMtube	muscle
35	chr9:503800-504400	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
36	chr9:503800-504400	Flanking Active TSS	NHEK	skin
37	chr9:503800-504600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
38	chr9:503800-504600	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr9:503800-504600	Active TSS	Fetal Kidney	kidney
40	chr9:503800-505200	Flanking Active TSS	Primary hematopoietic stem cells	blood
41	chr9:503800-505400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr9:503800-505400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr9:503800-505600	Active TSS	Lung	lung
44	chr9:503800-505800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
45	chr9:503800-505800	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr9:503800-506000	Active TSS	Aorta	Aorta
47	chr9:503800-506000	Active TSS	Right Atrium	heart
48	chr9:504000-504400	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr9:504000-504400	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr9:504000-504400	Flanking Bivalent TSS/Enh	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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