Variant report

Variant	rs12003391
Chromosome Location	chr9:16239560-16239561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11999421	1.00[AMR][1000 genomes]
rs12004108	1.00[AMR][1000 genomes]
rs12006220	1.00[AMR][1000 genomes]
rs7038963	1.00[AMR][1000 genomes]
rs7047223	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv429999	chr9:16102066-16389100	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv892639	chr9:16190403-16242088	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv892640	chr9:16206695-16260837	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv892641	chr9:16218659-16242088	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv892642	chr9:16233085-16282979	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16235200-16243200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:16235400-16242400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:16236400-16240200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr9:16236600-16240200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:16237000-16240400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr9:16237000-16240600	Weak transcription	A549	lung
7	chr9:16237000-16245400	Weak transcription	Adipose Nuclei	Adipose
8	chr9:16237200-16240400	Weak transcription	Osteobl	bone
9	chr9:16237400-16239600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr9:16237400-16240200	Weak transcription	NHLF	lung
11	chr9:16237400-16240400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr9:16237400-16241200	Weak transcription	HSMMtube	muscle
13	chr9:16237600-16240600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr9:16237600-16241200	Weak transcription	HSMM	muscle
15	chr9:16238200-16246800	Weak transcription	Fetal Lung	lung
16	chr9:16239000-16240400	Weak transcription	NHDF-Ad	bronchial
17	chr9:16239200-16239600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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