Variant report

Variant	rs12004108
Chromosome Location	chr9:16316332-16316333
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11999421	1.00[AMR][1000 genomes]
rs12002157	1.00[AMR][1000 genomes]
rs12003391	1.00[AMR][1000 genomes]
rs12003506	1.00[AMR][1000 genomes]
rs12006220	1.00[AMR][1000 genomes]
rs35750662	1.00[AMR][1000 genomes]
rs7038963	1.00[AMR][1000 genomes]
rs7047223	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv429999	chr9:16102066-16389100	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv892644	chr9:16275107-16389006	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv892645	chr9:16292669-16368732	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv613668	chr9:16310620-16377360	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16308800-16318200	Enhancers	Fetal Lung	lung
2	chr9:16310600-16317000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:16310600-16317400	Weak transcription	Colon Smooth Muscle	Colon
4	chr9:16312200-16321200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr9:16314400-16317600	Enhancers	Ovary	ovary
6	chr9:16314600-16317800	Enhancers	Fetal Muscle Trunk	muscle
7	chr9:16314600-16319000	Enhancers	Fetal Muscle Leg	muscle
8	chr9:16315200-16316400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:16315200-16317200	Enhancers	Adipose Nuclei	Adipose
10	chr9:16315400-16319000	Enhancers	Fetal Stomach	stomach
11	chr9:16315400-16335600	Weak transcription	Right Ventricle	heart
12	chr9:16315600-16316400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr9:16315600-16316600	Enhancers	Fetal Kidney	kidney
14	chr9:16315800-16316400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr9:16315800-16316800	Bivalent Enhancer	Brain Germinal Matrix	brain
16	chr9:16315800-16317200	Bivalent Enhancer	Placenta	Placenta
17	chr9:16315800-16318200	Enhancers	Fetal Brain Male	brain
18	chr9:16315800-16319200	Enhancers	Stomach Smooth Muscle	stomach
19	chr9:16315800-16321200	Weak transcription	NHLF	lung
20	chr9:16316000-16316600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr9:16316000-16318000	Enhancers	HSMMtube	muscle
22	chr9:16316000-16321200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr9:16316200-16316600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr9:16316200-16317200	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr9:16316200-16320600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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