Variant report

Variant	rs12004586
Chromosome Location	chr9:72181521-72181522
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12000827	0.88[GIH][hapmap]
rs12001803	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs1411441	0.88[GIH][hapmap]
rs1411442	0.88[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039966	chr9:72057304-72181564	Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv893437	chr9:72118962-72223176	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1049390	chr9:72168645-72185751	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72163200-72185600	Weak transcription	Aorta	Aorta
2	chr9:72170200-72184200	Weak transcription	Ovary	ovary
3	chr9:72173800-72188400	Weak transcription	Fetal Lung	lung
4	chr9:72178600-72181800	Enhancers	Brain Germinal Matrix	brain
5	chr9:72178600-72181800	Enhancers	Fetal Brain Male	brain
6	chr9:72179800-72184000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:72180000-72181800	Enhancers	Fetal Muscle Trunk	muscle
8	chr9:72180000-72181800	Enhancers	Right Atrium	heart
9	chr9:72180000-72183600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:72180200-72183800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr9:72180400-72183800	Weak transcription	Adipose Nuclei	Adipose
12	chr9:72180400-72183800	Weak transcription	Fetal Muscle Leg	muscle
13	chr9:72180400-72185000	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr9:72180400-72208400	Weak transcription	Gastric	stomach
15	chr9:72180600-72181600	Enhancers	Brain Cingulate Gyrus	brain
16	chr9:72180600-72184200	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr9:72180800-72183800	Weak transcription	Fetal Brain Female	brain
18	chr9:72181000-72184000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr9:72181000-72184200	Weak transcription	Right Ventricle	heart
20	chr9:72181000-72195000	Weak transcription	Left Ventricle	heart
21	chr9:72181200-72181800	Enhancers	Brain Anterior Caudate	brain
22	chr9:72181200-72184600	Weak transcription	Brain Hippocampus Middle	brain
23	chr9:72181200-72188400	Weak transcription	Liver	Liver
24	chr9:72181400-72183800	Weak transcription	Fetal Heart	heart
25	chr9:72181400-72193000	Weak transcription	Brain Inferior Temporal Lobe	brain

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