Variant report

Variant	rs12004795
Chromosome Location	chr9:15252242-15252243
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12005971	0.81[ASN][1000 genomes]
rs12336514	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12343461	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12352604	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2061729	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55998824	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56257383	0.81[ASN][1000 genomes]
rs72700659	0.81[ASN][1000 genomes]
rs72700660	0.81[ASN][1000 genomes]
rs72700662	0.81[ASN][1000 genomes]
rs7846987	0.82[ASN][1000 genomes]
rs7864179	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031340	chr9:15163004-15332769	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15223400-15258200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr9:15238400-15275400	Weak transcription	Fetal Intestine Large	intestine
3	chr9:15240400-15265600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr9:15240600-15275400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr9:15241200-15273400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr9:15241200-15286200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr9:15243000-15293400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr9:15243400-15253600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr9:15244600-15273400	Weak transcription	Stomach Mucosa	stomach
10	chr9:15244800-15253400	Weak transcription	Primary T cells from cord blood	blood
11	chr9:15247000-15271400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr9:15247600-15253200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr9:15247800-15253200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr9:15248600-15253600	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr9:15249200-15265200	Weak transcription	Lung	lung
16	chr9:15249400-15268600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr9:15249600-15256400	Weak transcription	Fetal Lung	lung
18	chr9:15249600-15276200	Weak transcription	Fetal Kidney	kidney
19	chr9:15249800-15255600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr9:15249800-15260000	Weak transcription	Left Ventricle	heart
21	chr9:15249800-15268400	Weak transcription	Psoas Muscle	Psoas
22	chr9:15249800-15276200	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr9:15250000-15265800	Weak transcription	Stomach Smooth Muscle	stomach
24	chr9:15250200-15253000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr9:15250200-15253000	Weak transcription	HepG2	liver
26	chr9:15250200-15253000	Weak transcription	HUVEC	blood vessel
27	chr9:15250200-15253200	Weak transcription	NH-A	brain
28	chr9:15250200-15253400	Weak transcription	Osteobl	bone
29	chr9:15250200-15255200	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr9:15250200-15258000	Weak transcription	Aorta	Aorta
31	chr9:15250200-15258400	Weak transcription	Fetal Intestine Small	intestine
32	chr9:15250200-15258400	Weak transcription	Ovary	ovary
33	chr9:15250200-15268200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr9:15250200-15272200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr9:15250200-15288200	Weak transcription	Fetal Stomach	stomach
36	chr9:15250400-15253200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr9:15250400-15253200	Weak transcription	HSMM	muscle
38	chr9:15250400-15256600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr9:15250400-15260200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr9:15250600-15253000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr9:15250600-15253200	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr9:15250800-15258400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr9:15251000-15272000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr9:15251200-15258200	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr9:15251400-15253800	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr9:15251400-15273600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr9:15252200-15255200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr9:15252200-15271800	Weak transcription	Primary T helper cells fromperipheralblood	blood

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