Variant report

Variant	rs1201698
Chromosome Location	chr6:64280263-64280264
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:64280071-64285528	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr6:64279467-64285844	HepG2	liver:	n/a	n/a
3	POLR2A	chr6:64279550-64280874	HepG2	liver:	n/a	n/a
4	CEBPB	chr6:64280141-64280673	Hela-S3	cervix:	n/a	n/a
5	EP300	chr6:64280252-64280751	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:64271187..64280436-chr6:64280675..64285943,14	K562	blood:
2	chr6:64229449..64231298-chr6:64279012..64281297,2	MCF-7	breast:
3	chr14:20811260..20811792-chr6:64279647..64280554,2	HCT-116	colon:

Variant related genes	Relation type
PTP4A1	TF binding region
ENSG00000112245	Chromatin interaction
ENSG00000129484	Chromatin interaction
ENSG00000266680	Chromatin interaction
ENSG00000259001	Chromatin interaction

rs_ID	r²[population]
rs1198039	1.00[AFR][1000 genomes]
rs1211649	0.88[AMR][1000 genomes]
rs17394455	1.00[AFR][1000 genomes]
rs1779776	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs1779781	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64276000-64281200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr6:64276200-64281200	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr6:64276200-64281800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr6:64276400-64281400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:64276600-64281600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:64276600-64281600	Weak transcription	Placenta	Placenta
7	chr6:64276800-64281200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr6:64276800-64281200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:64276800-64281200	Weak transcription	Fetal Lung	lung
10	chr6:64276800-64281400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:64277000-64281000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:64277000-64281400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:64278600-64281200	Weak transcription	Duodenum Mucosa	Duodenum
14	chr6:64279000-64281200	Weak transcription	Stomach Mucosa	stomach
15	chr6:64279200-64280400	Enhancers	HepG2	liver
16	chr6:64279600-64280600	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr6:64279600-64281200	Enhancers	Fetal Intestine Large	intestine
18	chr6:64279600-64281200	Enhancers	Fetal Intestine Small	intestine
19	chr6:64279800-64280600	Flanking Active TSS	Hela-S3	cervix
20	chr6:64279800-64281200	Enhancers	HMEC	breast
21	chr6:64280000-64281400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:64280200-64280400	Flanking Active TSS	Liver	Liver
23	chr6:64280200-64280800	Flanking Active TSS	A549	lung
24	chr6:64280200-64281000	Enhancers	Rectal Mucosa Donor 29	rectum
25	chr6:64280200-64281200	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr6:64280200-64281200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr6:64280200-64281200	Enhancers	NHEK	skin
28	chr6:64280200-64281400	Weak transcription	Colonic Mucosa	Colon
29	chr6:64280200-64281600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr6:64280200-64281600	Weak transcription	Pancreas	Pancrea

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