Variant report

Variant	rs12021704
Chromosome Location	chr1:211088631-211088632
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211081640..211084626-chr1:211086454..211089760,4	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11119654	0.80[CEU][hapmap];0.85[CHB][hapmap];0.82[ASN][1000 genomes]
rs11806852	0.80[CEU][hapmap];0.85[CHB][hapmap]
rs12022715	0.82[ASN][1000 genomes]
rs12022739	0.82[ASN][1000 genomes]
rs12026374	0.88[CEU][hapmap];0.84[CHB][hapmap]
rs12028941	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12030715	0.84[CHB][hapmap]
rs12030905	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12036999	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs12039302	0.85[ASN][1000 genomes]
rs12043937	0.82[ASN][1000 genomes]
rs12046391	0.82[ASN][1000 genomes]
rs12070402	0.82[ASN][1000 genomes]
rs12406562	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1501544	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1501545	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1501548	0.80[CEU][hapmap];0.85[CHB][hapmap];0.82[ASN][1000 genomes]
rs1501549	0.80[CEU][hapmap];0.85[CHB][hapmap];0.81[ASN][1000 genomes]
rs1501550	0.85[CHB][hapmap];0.82[ASN][1000 genomes]
rs1532682	0.80[CEU][hapmap];0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs2358210	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4570464	0.80[CEU][hapmap];0.86[CHB][hapmap]
rs4575146	0.85[CHB][hapmap]
rs56999636	0.84[ASN][1000 genomes]
rs57655345	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs61848992	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61849000	0.89[ASN][1000 genomes]
rs61849015	0.85[ASN][1000 genomes]
rs61849024	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6540636	0.91[CHB][hapmap];0.89[ASN][1000 genomes]
rs6540638	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6540648	0.80[CEU][hapmap];0.80[CHB][hapmap]
rs6659135	0.82[ASN][1000 genomes]
rs6666287	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6666342	0.80[CEU][hapmap];0.82[CHB][hapmap]
rs6675213	1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6678568	0.91[CHB][hapmap];0.86[ASN][1000 genomes]
rs6680997	0.80[CEU][hapmap];0.85[CHB][hapmap];0.82[ASN][1000 genomes]
rs6689715	0.82[ASN][1000 genomes]
rs7514606	0.85[CHB][hapmap]
rs7518841	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7522894	0.97[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7523929	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7551412	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7553997	0.86[CHB][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7554723	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv873154	chr1:211057697-211117197	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211082800-211091000	Weak transcription	Brain Anterior Caudate	brain
2	chr1:211083000-211089600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr1:211083000-211091000	Weak transcription	Brain Angular Gyrus	brain
4	chr1:211083000-211091000	Weak transcription	Brain Hippocampus Middle	brain
5	chr1:211083000-211091200	Weak transcription	Brain Substantia Nigra	brain
6	chr1:211083800-211089400	Weak transcription	HSMMtube	muscle
7	chr1:211084600-211089400	Weak transcription	HSMM	muscle
8	chr1:211085400-211089400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr1:211085600-211089000	Weak transcription	Liver	Liver
10	chr1:211085800-211091000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr1:211087600-211091400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr1:211088400-211091000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr1:211088600-211088800	Enhancers	Esophagus	oesophagus
14	chr1:211088600-211089600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:211088600-211090000	Enhancers	Pancreas	Pancrea

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