Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:225869543..225871778-chr1:225872054..225874171,2	K562	blood:
2	chr1:225871460..225874558-chr1:225874980..225880018,4	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10915872	0.85[CEU][hapmap];0.83[TSI][hapmap]
rs10915875	0.83[CEU][hapmap]
rs12021669	0.84[CEU][hapmap]
rs12023665	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12024341	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12025069	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12025085	0.85[CEU][hapmap]
rs12025267	0.92[CEU][hapmap]
rs12032511	0.85[CEU][hapmap]
rs12036321	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12039184	0.85[CEU][hapmap]
rs12047500	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12048956	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12562612	0.85[CEU][hapmap]
rs1849685	0.84[CEU][hapmap]
rs1857008	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2078389	0.85[CEU][hapmap]
rs2615061	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61850616	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61850655	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61850657	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6694856	0.92[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs943759	0.88[CHB][hapmap];0.96[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832725	chr1:225726998-225910121	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832736	chr1:225815717-225968619	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225865400-225872600	Weak transcription	Aorta	Aorta
2	chr1:225865400-225878600	Weak transcription	Right Atrium	heart
3	chr1:225865600-225888000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr1:225870800-225871800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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