Variant report

Variant	rs12022165
Chromosome Location	chr1:210745328-210745329
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12040304	0.85[CHD][hapmap]
rs4845053	1.00[ASW][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes]
rs4845054	1.00[CEU][hapmap];0.83[CHB][hapmap];0.84[JPT][hapmap]
rs4845055	1.00[CEU][hapmap];0.83[CHB][hapmap];0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210739400-210753000	Weak transcription	HSMMtube	muscle
2	chr1:210744600-210746000	Enhancers	Brain Germinal Matrix	brain
3	chr1:210745200-210746000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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