Variant report

Variant	rs12025006
Chromosome Location	chr1:215222720-215222721
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10429947	0.85[CHB][hapmap]
rs10779632	0.85[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap]
rs12023861	1.00[CHB][hapmap];0.80[CHD][hapmap]
rs12024284	0.84[ASN][1000 genomes]
rs12044793	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12047560	0.92[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1349672	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs1452634	0.85[CHB][hapmap];0.84[CHD][hapmap];0.81[GIH][hapmap];0.84[JPT][hapmap]
rs7538655	0.86[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468105	chr1:215167236-215248417	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv549182	chr1:215167236-215248417	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215220200-215225400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:215220600-215225000	Weak transcription	NHDF-Ad	bronchial
3	chr1:215221200-215227600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr1:215222000-215222800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
5	chr1:215222400-215224000	Weak transcription	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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