Variant report

Variant	rs12026135
Chromosome Location	chr1:220968099-220968100
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:220965572..220968372-chr1:220969216..220971838,2	MCF-7	breast:
2	chr1:220963256..220967868-chr1:220967973..220972005,4	MCF-7	breast:
3	chr1:220958915..220961807-chr1:220964103..220968214,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000186205	Chromatin interaction

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10863565	0.82[JPT][hapmap]
rs11118602	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs11118603	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs11118604	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11803233	0.87[YRI][hapmap]
rs11808207	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs12021979	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs12023067	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12023202	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs12023249	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs12023303	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs12023484	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12026813	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs12026877	0.82[ASN][1000 genomes]
rs12027068	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12027298	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs12027930	0.82[ASN][1000 genomes]
rs12028887	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs12029901	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12030190	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12030249	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12030434	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12031217	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12031225	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12031479	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs12032061	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12032336	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs12033644	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12033732	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12033808	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12034995	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs12035639	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs12038224	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs12039043	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12039064	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12039091	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12039273	0.92[ASN][1000 genomes]
rs12041923	0.86[CHB][hapmap]
rs12042585	0.82[JPT][hapmap]
rs12043238	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs12044903	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs12045953	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs12046511	0.89[CHB][hapmap]
rs12047899	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs12048861	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs17008680	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs182872	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs1874115	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1874116	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1874117	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1874118	0.82[ASN][1000 genomes]
rs1874122	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1874123	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1982895	0.85[CHB][hapmap]
rs2067632	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs2067633	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs2270534	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2270535	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2275574	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs2642446	0.82[JPT][hapmap]
rs337140	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs35297838	0.82[JPT][hapmap]
rs371348	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs3767324	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs3795535	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs3820350	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs3820353	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs419746	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs453079	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs57187572	0.82[ASN][1000 genomes]
rs58744613	0.82[ASN][1000 genomes]
rs58774365	0.82[ASN][1000 genomes]
rs60326124	0.82[ASN][1000 genomes]
rs6669217	0.87[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6671579	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6672013	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6687366	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs67889619	0.95[ASN][1000 genomes]
rs72470587	0.82[ASN][1000 genomes]
rs72470600	0.95[ASN][1000 genomes]
rs72472309	0.87[ASN][1000 genomes]
rs746767	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs953970	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9970393	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs9970394	0.88[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220961000-220970200	Weak transcription	Fetal Kidney	kidney
2	chr1:220961000-220971200	Weak transcription	Spleen	Spleen
3	chr1:220961000-220973400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:220961000-220976800	Weak transcription	Ovary	ovary
5	chr1:220961000-220978200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr1:220961000-220982200	Weak transcription	Brain Substantia Nigra	brain
7	chr1:220961200-220971200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr1:220961400-220970600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr1:220961400-220983800	Weak transcription	Esophagus	oesophagus
10	chr1:220961600-220969400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr1:220961600-220970000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr1:220961600-220970600	Weak transcription	Fetal Brain Female	brain
13	chr1:220961600-220971000	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr1:220961600-220975000	Weak transcription	Brain Angular Gyrus	brain
15	chr1:220961600-220975200	Weak transcription	Brain Cingulate Gyrus	brain
16	chr1:220961600-220983600	Weak transcription	Pancreas	Pancrea
17	chr1:220961800-220969600	Weak transcription	Stomach Mucosa	stomach
18	chr1:220961800-220969800	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr1:220961800-220970000	Weak transcription	Fetal Stomach	stomach
20	chr1:220961800-220971600	Weak transcription	Brain Germinal Matrix	brain
21	chr1:220961800-220972000	Weak transcription	Rectal Smooth Muscle	rectum
22	chr1:220961800-220974200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr1:220961800-220979800	Weak transcription	Right Atrium	heart
24	chr1:220961800-220981400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr1:220961800-220981600	Weak transcription	Fetal Muscle Trunk	muscle
26	chr1:220961800-220983800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr1:220962000-220975000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr1:220962600-220969800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr1:220964000-220974000	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr1:220964800-220970600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr1:220964800-220972000	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr1:220964800-220978400	Weak transcription	Primary B cells from cord blood	blood
33	chr1:220965000-220968400	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr1:220965000-220970000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr1:220965000-220972600	Weak transcription	Colonic Mucosa	Colon
36	chr1:220965000-220972600	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr1:220965000-220980000	Weak transcription	Fetal Muscle Leg	muscle
38	chr1:220965200-220968200	Genic enhancers	Primary neutrophils fromperipheralblood	blood
39	chr1:220965200-220969600	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr1:220965200-220970000	Weak transcription	Lung	lung
41	chr1:220965200-220971000	Weak transcription	Colon Smooth Muscle	Colon
42	chr1:220965200-220971600	Weak transcription	Right Ventricle	heart
43	chr1:220965200-220979600	Weak transcription	Gastric	stomach
44	chr1:220965200-220985400	Weak transcription	Aorta	Aorta
45	chr1:220965400-220970000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr1:220965400-220970400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr1:220965400-220970800	Weak transcription	Fetal Brain Male	brain
48	chr1:220965400-220971200	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr1:220965400-220971600	Weak transcription	Left Ventricle	heart
50	chr1:220965400-220972400	Weak transcription	Brain Anterior Caudate	brain

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