The 2.0 version of rSNPBase

Variant report

Variant rs12029221
Chromosome Location chr1:85893977-85893978
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:38 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:85874000-85903800 Weak transcription NHLF lung
2 chr1:85874200-85903600 Weak transcription Muscle Satellite Cultured Cells --
3 chr1:85874400-85903600 Weak transcription HepG2 liver
4 chr1:85874400-85904200 Weak transcription NH-A brain
5 chr1:85886400-85899000 Weak transcription NHDF-Ad bronchial
6 chr1:85886400-85903800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
7 chr1:85886400-85914200 Weak transcription HSMMtube muscle
8 chr1:85886800-85897200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
9 chr1:85886800-85903800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
10 chr1:85887600-85902200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
11 chr1:85887600-85903400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
12 chr1:85890000-85894200 Weak transcription HSMM muscle
13 chr1:85890400-85902200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
14 chr1:85891000-85897200 Weak transcription Fetal Brain Female brain
15 chr1:85891600-85897200 Weak transcription Osteobl bone
16 chr1:85891800-85894000 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
17 chr1:85892200-85906200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
18 chr1:85892800-85894400 Enhancers Fetal Brain Male brain
19 chr1:85893000-85894200 Enhancers Colon Smooth Muscle Colon
20 chr1:85893000-85894600 Enhancers Liver Liver
21 chr1:85893200-85894200 Weak transcription Fetal Intestine Small intestine
22 chr1:85893400-85894200 Enhancers Rectal Mucosa Donor 29 rectum
23 chr1:85893400-85894400 Enhancers Aorta Aorta
24 chr1:85893400-85894400 Enhancers Psoas Muscle Psoas
25 chr1:85893400-85894400 Enhancers Skeletal Muscle Female skeletal muscle
26 chr1:85893400-85894600 Enhancers Primary hematopoietic stem cells short term culture blood
27 chr1:85893400-85894600 Enhancers Skeletal Muscle Male skeletal muscle
28 chr1:85893600-85894000 Weak transcription HUVEC blood vessel
29 chr1:85893600-85894400 Enhancers Brain Anterior Caudate brain
30 chr1:85893600-85894400 Enhancers Sigmoid Colon Sigmoid Colon
31 chr1:85893600-85894600 Genic enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
32 chr1:85893600-85894600 Enhancers Adipose Nuclei Adipose
33 chr1:85893600-85894600 Enhancers Pancreas Pancrea
34 chr1:85893600-85897000 Weak transcription Cortex derived primary cultured neurospheres brain
35 chr1:85893800-85894600 Enhancers Primary B cells from peripheral blood blood
36 chr1:85893800-85897000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
37 chr1:85893800-85906200 Weak transcription Rectal Smooth Muscle rectum
38 chr1:85893800-85916800 Weak transcription Breast Myoepithelial Primary Cells Breast

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Last update: Aug 31, 2015