Variant report

Variant	rs12030830
Chromosome Location	chr1:195736190-195736191
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10921905	0.83[ASN][1000 genomes]
rs11807635	0.82[ASN][1000 genomes]
rs11810167	0.83[ASN][1000 genomes]
rs12030394	0.82[ASN][1000 genomes]
rs12038958	0.82[ASN][1000 genomes]
rs12042500	0.83[ASN][1000 genomes]
rs12042815	0.83[ASN][1000 genomes]
rs12045875	0.83[ASN][1000 genomes]
rs12048401	0.83[ASN][1000 genomes]
rs60298660	0.83[ASN][1000 genomes]
rs72734167	0.83[ASN][1000 genomes]
rs72736123	0.83[ASN][1000 genomes]
rs72736141	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs876716	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872894	chr1:195053221-195745968	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv872937	chr1:195493538-195849028	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1007203	chr1:195672857-195902360	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv2762211	chr1:195734313-195741103	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:195736000-195736400	Enhancers	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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